AMCG00006553


Basic Information

Item Value
gene id AMCG00006553
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8851743 ~ 8856674 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006553
AAAGGGATCACCAAGCTCAGGAAAGATCCACAGGTCGAGTTGCTCTGACCCACCTCCTCCGTTTCTCATGGCTTACTGACCTAATGAACATGGACATTTCATGACctggcttttcctttttttccctctctcttaaTGAAGAAAGTAGTCCCTGGACAGGTCTGAGAGTTGTGTATGCATACATTTACGGGACAATGAGTGATATTCCTCTGGACACAGAGTTTGATATTCTTGATGAAGAAGGGAAACTGTATGCAGCCGAttctttgaataatttaaacaagCTGAATGTTTGCAGTGATCCACAGCAACTTTTATCAGCAGATCTGCCCTCTAGCTCCCAGGATAATGCCATCCAGATTGCCAAGGGAGGTTTGAATGGCACCAAAGAAAGTCCCAGAGAAGGACGCATGGAGTCGGTCTTCCGGTTCATAAAGGGTGACGAACATCCCCCCGCGGAGGAAGCCGATGCCAGTAAACCCTGGTGTAACTGCTCCAGATGTCTGTGCATACTGCTGATAATCCTCACTGTGGCGTTGGCAGCCAGTCTAATTATGTCCTTCTATGCAATCTATTTAATGGTACAAACCACTGAGAAAATGGAGGGACTCCCTAACAACGAGCTAAATAAAAAAGTCCTGGAAGAAATGAAGGAATGGAAAGTTTTCATAGTAAAATACTTAAACTATTCAATGGCTGCCCAACACGGAGAGGGCGGGACCTCGGAAGCTCCTCCTCTCAACAGCTCAACTGACAAAACATAGAGGGCCGATCAGTGGAGTGTTTTTCTAATCTCACAGGAAGCCTtattcacaataataaaatgtccgTTTTCCTCTCCTTCCAGAGGAGAAGCAGACAATACATGAATTACCCTTTCCCGGAGCACTGCTTTGAATAATGTAAGGATTACAATGTGCTCTTCTGCATTATTAAGTGCATCTGCATGGATGGCAGGGTGGTTCTACTTGACTCCATCCAATATAATGTACTGCTTTCTTTCACCTACAAAAAGCAATTCAGCTCAGGTCAGGCCCTTGATGTATTTCCACCTGGagataaaaaaagcaaaccataGCACTCCTATTGATACAGATATCTGGCAAAGGAGAAGTGCGAGATGCATTGATTTTTTATGATTGGATGGACAAGGAAAAAAGtcaaaatgtgaatgtattacatgtatatatttgataatAAAAGTCATATTGTGCTGTACTTATGATAACTATAATTAtag

Function

GO:

id name namespace
GO:0072350 tricarboxylic acid metabolic process biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00620 Pyruvate metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006553 True 1240 mRNA 0.42 5 8851743 8856674

Neighbor

gene id symbol gene type direction distance location
AMCG00006550 foxp2 coding downstream 339121 8477343 ~ 8512622 (-)
AMCG00006549 mdfic,si:ch211-262n1.4,LOC107656347,LOC107658868,LOC107584008 coding downstream 427145 8419388 ~ 8424598 (-)
AMCG00006547 tmem209,LOC102778061 coding downstream 668189 8174241 ~ 8183554 (-)
AMCG00006548 NA coding downstream 682352 8169002 ~ 8169391 (-)
AMCG00006545 LOC107725924,LOC107658882,LOC107583963,LOC107656398,LOC103371314 coding downstream 714532 8128879 ~ 8137211 (-)
AMCG00006554 NA coding upstream 1671 8858345 ~ 8869522 (-)
AMCG00006559 LOC102797044,LOC102787037 coding upstream 31017 8887691 ~ 8912003 (-)
AMCG00006562 LOC105007066,LOC106576072,LOC106609221 coding upstream 338762 9195436 ~ 9197467 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding upstream 714815 9571489 ~ 9587506 (-)
AMCG00006570 NA coding upstream 732257 9588931 ~ 9592122 (-)
G110369 psmc2 non-coding downstream 942515 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 1094891 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 1283584 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 1284176 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 1293275 7558205 ~ 7558468 (-)
G110576 NA non-coding upstream 153466 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 619808 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 1448257 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 1564887 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 1746421 10603095 ~ 10603733 (-)
G110520 bmt2 other downstream 57681 8783905 ~ 8794062 (-)
G110507 NA other downstream 127391 8722388 ~ 8724352 (-)
G110195 NA other downstream 1744605 7078389 ~ 7107138 (-)
G110140 NA other downstream 2065892 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 2808819 6014104 ~ 6042924 (-)
G110570 LOC106576073 other upstream 140963 8997637 ~ 8999264 (-)
G110605 NA other upstream 688821 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 1230601 10087275 ~ 10107285 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 3161195 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 3192820 12049494 ~ 12069660 (-)

Expression


Co-expression Network