AMCG00006554


Basic Information

Item Value
gene id AMCG00006554
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8858345 ~ 8869522 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006554
AGCCCTGGTTTTAGAGGGAAAATGTGTCGTTTTCGTTCGCAGACTTTCACTGGGATTGCTTTTTATTCTTATCTTTTAACGGTGCCGCTTGACGGTTTTCATTTGGAGAGACAATACAGTAAAAACTGGTCATCTATTGGCTGATTTGGGGTTTAgatttgatcatttttttatacaaaaatgCCACGGTCCAAGAAGAGGAATAACCGAGGAGCACCGCACCGTGGTGTGCAGCCTTTCAGCGACGAGGACGCCTCCATCGAAACGCTGAGCCACTGCAGCAGCCTCAGTGACGCCGCCAGCACGAGGCTGACTGCTCTTGATGGGTTGAAAATTGCGATGGCATCCAAAATGCAGTATGAATTTCTCCTTGAAAGAAGAATGACCATAACGGATAGCATTGAACGGTGCTTGAAGAAAGGCAAAGGCGATGAACAGCGCGCTGCAGCCTCCCTGGCTTGTCTCCTGTGCATTCAGCTGGGTTCAGGGATCGAGAGTGAAGAAGCCTTTAAGACTCTCAAAcccattttcaaaaatattctTGCTGATGGAACTGCCAACATACAAGCCAGACAAGCTtgtgcCACAGCTTTGGGGGTTTGCAGTTTGGTTGCTGAAGATGATATTCTgGATGTGTATGCAACTATGGAATGCTTTGAAAGCCTCTTCACTAAATCATACGTAAAGGAAGATGGGACTCGCactgtcttcagtgcccaaactaCAGTGCTCCACATCAATGCTCTGTTGGCATGGACACTGCTACTGACCATTTGCTCCAACACTGAAGTGAAAAAAATTCTTAAGAAGCATTTACCTAAACTTCCCAGTCTGTTGGACAGCGATGATGTCAACATGAGGATTTCTGCTGGACAGACTATTGCTCTCCTGTTTGAGTTGGCCAGAGATCTGGATGCGGAGTTTGAATATGAGGAACTGGAGCCCCTGTGTGCACAGCTGACGGCCCTGGCCACTGATTGTAACAAACACAGGGCCAAAAACGACAAGAGGAAGCAGAGGTCTGTCTTCAGAGATGTGTTAAAGGCTGTTGAGGAGGGAGACTTCCAGCCCGAGACGATCCGGTTTGGTGCTGAGCGTATGTACGTGGACAGCTGGGTGAAGATGAGAACCTATGATGCCTTCAGAGAACTTCTAGGATCGGGAATGAACTACCACCTGCAGGCCAACGAGTTCATACGCAATGTGTTTGAGCTCGGGGCACCTATGATGGTCGACTCTGCGAAGCTGAAGGCCATGAAAATCTCCCGCTTTGAGAGGCACTTGTACAACGCCGCTGCCTTTAAAGCTCGGACTAAGGCCAGGAGCAAATTTCGGGACAAGAGGGTGGATGTTGGAGTTGGAGACTTCATTTAGCAATTTTTTGGAGTccattttggtatttttaacCATTATTTAAAACCTTGTATATTGTGATGCATACATCTGTTAGAAGTAgcatcagattaatttaatttatctatttattttccttttttctgtaaATAGACTAACTCGAATCGTGGAGTTTGTCGTTTCGCCATTTGCGTATGTCTTCCTTGTTGTTGGAGTGAGAAATTATAATAAGTTGTATCCTCTGGTATACCTATATTAAATGAATCCTCGCATGCTACAtcagaataatatttttttggcTTTGGTATATAATGGGGTTGGGTAATATTATACATCTGAATTAGCAGATCTTTTTGtgagtaattttatttataatctgaaattccatataaatgtttttgttttctccctgattaaaacttttattttaagaaccTGTGAATTAAGTAAATGCTAAATAAAGTGTACTCTGCCTCTTACCCAAAATGCTGTGTGCGGTGTTGCATTGCTGAGAACCGTTTCCAAATACTGAGTGGAATTGTGTGCCAGACGGTGTAGCACTTAATACTATTTTAGCACTGCTGCCGTATAACTGTGACTGAACATACCTGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006554 True 1967 mRNA 0.43 11 8858345 8869522

Neighbor

gene id symbol gene type direction distance location
AMCG00006553 NA coding downstream 1671 8851743 ~ 8856674 (-)
AMCG00006550 foxp2 coding downstream 345723 8477343 ~ 8512622 (-)
AMCG00006549 mdfic,si:ch211-262n1.4,LOC107656347,LOC107658868,LOC107584008 coding downstream 433747 8419388 ~ 8424598 (-)
AMCG00006547 tmem209,LOC102778061 coding downstream 674791 8174241 ~ 8183554 (-)
AMCG00006548 NA coding downstream 688954 8169002 ~ 8169391 (-)
AMCG00006559 LOC102797044,LOC102787037 coding upstream 18169 8887691 ~ 8912003 (-)
AMCG00006562 LOC105007066,LOC106576072,LOC106609221 coding upstream 325914 9195436 ~ 9197467 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding upstream 701967 9571489 ~ 9587506 (-)
AMCG00006570 NA coding upstream 719409 9588931 ~ 9592122 (-)
AMCG00006573 NA coding upstream 736016 9605538 ~ 9606425 (-)
G110369 psmc2 non-coding downstream 949117 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 1101493 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 1290186 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 1290778 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 1299877 7558205 ~ 7558468 (-)
G110576 NA non-coding upstream 140618 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 606960 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 1435409 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 1552039 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 1733573 10603095 ~ 10603733 (-)
G110520 bmt2 other downstream 64283 8783905 ~ 8794062 (-)
G110507 NA other downstream 133993 8722388 ~ 8724352 (-)
G110195 NA other downstream 1751207 7078389 ~ 7107138 (-)
G110140 NA other downstream 2072494 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 2815421 6014104 ~ 6042924 (-)
G110570 LOC106576073 other upstream 128115 8997637 ~ 8999264 (-)
G110605 NA other upstream 675973 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 1217753 10087275 ~ 10107285 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 3148347 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 3179972 12049494 ~ 12069660 (-)

Expression


Co-expression Network