AMCG00006556 (bmt2)


Basic Information

Item Value
gene id AMCG00006556
gene name bmt2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8746594 ~ 8794059 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006556
AGCCAATCAGATCGCACGTTGTCGATTCCCGAACCTGCGCGCCGGTGCCCCGGAGGAGGAGCGGCTCAGTACTATGGAGCCCGTTTACAATGCTCGGTTCGGCGAGAAGGAAACCGACCCCGGCAGGACCCGAGCCGTCGGACCGGGAGAGGGCCAGCACCACAAACTGGAGCAGGAGAAACTGTCCGGAGTGGTTAAGAGCGTCCATAGGAAGCTGCGCAAGAAGTACAGAGAAGgagCACATAGTCTAGACGCGATGGGGGACTTCGATAAGATCTGGCGCGAGCACTGCGAGGATGAAGAGACGCTCAGCGAGTACGCCGAGGCCATGAAGAACCTAGCGGACAACCACTGGGCCAAGACCTGTGAAGGAGAAGGGCGCATCGAGTGGTGTCGGAGtgtTTGCCAGGAGTACTTTTTGGATGGTGGAATGAAGAGAATGCTGGAGAAAGATGAGAAAAGTGCTCGTCTCGCAATCGCCATGACTACAACTACATTTAATGCACAACAGCATCCAAACAATGGACCACTGAAGTTGAGTCACCAATCGGGGAAAATCCGCTTGCTGGATGTTGGCAGCTGCTTTAACCCATTTCTGAAGTTTGATGAGTTCCTGACCGTTGGCATTGATATTGTGCCTGCAGTTGAGAGCGTCTACAAATGCGACTTCCTCAacctgcagctgcagcagcctCTCCAGCTGGCGCGAGATGCTGTGGATGCCTTCCTGAAGCAGCTCCGCAACCCCATCGACGCCCTGCCCGGAGAGCTCTTCAACGTGGTGGTGTTCTCGCTCCTCCTCTCCTACTTCCCCTCGCCGTATCAGCGCTGGATCTGCTGCAAGAAAGCCCACGAACTCCTGGCTCTGAATGGACTGCTCCTCATCATCACGCCCGACTCCTCCCACCAGAACCGGCACGCCGCGATGATGAAGAGCTGGAAGGTGGCCGTGGAGTCGCTGGGCTTCAAGAGGTACAAGTACGTGAAGTTCTCCCACATGCATCTCATCGCCTTCCGTAAGGTCTCCCTGAACACCACCAGCGACCTCGTGAGCAGGAACTACCCCGAGATGCTGTACATCCCGCAGGACTTCAACAACGCCGAGGAGGAGGAGTACGCCGACGTGCCAGTGCAGATCCGATCCGAGCCGGACGAGGACCAGATCGCCTGCGGGTTCATGGAGCTCCCTGAAGCACTTTATGACTCGGACTCCGGCGAGAGCCAAGCCAGCTCCGGAATGTTCCACGAGATGGAAGACCCCATTTTACTGCAGAGCTAATGGACCGGACACTTAGAGCAAAGATGGGGCGGGGggggattaattaaaaaatgccttTTATTGTCTGAGCTGCTGTGTTGCCAAAATAATTCTGCTGTATTTCAATGCTCTgtgtgtaacaaaaaaaaaatgcagtttgcacaggaaaaaaagaagaagtacAGAAGTGGGTTGTTTTTTCTACGTCTGATATGAAATTAACAATATATCTGTATGGGggcttttttaaatgaaaaggattGACCATTGAATGCCTTCAGGATGGATAATGGGTCTCATCCTTCATGTTCATTCTATCTTTTCATTCGTCACGGTGGACCATCGGAATAATTCATATAACATTGAAGAATGCTTCACGCTCGTGATGcagtcatttgttttgtatccAGGAGGCAGATTAGTTCATCTAACATTTAAAAGCCAAATACTGAACCAACCTGAGGACACACACGTCAGACTCTTTCATGTTGGCCTCACGTTTGTCGGGCGGGGAATAAGGTGTTAGGTGTGAGGAGAGAAACTTCTTGAGGAAGTTTTTGCTGACTGCCTAGAGTTAGGCTGTAATTTGCACCCACTTCTTTGTGTAATTGTGCATTTAGTCTGATAGAGCTCTTTGTTAAATTTTCTTGACGAACAATGTGTTCTGTTCACTTTTGAACAAACTGGTGTTGGCCGTTTTTTAAGGCAACAATACCATTTTAACCTAGCATCTTTTGGCTGCTGACACTGGGAACCTCTTAAACAAATTGATGTCTGTAACATTTTAAGCTTCTCCAGCACTTTGCCGATATGCATATGATTTTTGAATTTTATTGTTGTGAATCTGTGAAAAAgaacaatgttttctttgatAACCATAgactgtaattacttggtacTTGTAATGCGAACCATTTAGACTGCGATTCATCTCTGTTCCAggcttttgtatgttttatatgtttatcAAATGTGTAGGTACTGGCCAGTTGGCATAATTCATTGAAAGCCTGTTTGATCataaaacatgtcattttttCAGGATCcagtgtttcagtttttaacGTGCTGCCATTTTGAATATGGAATGAGGGGCAACCTACCAAAACTGATTATAAATTCCTGGGAGAATATCAATATCTTTAATAAAATCTCCACTCCAGGAAATACTTCAAATCCAAAACTGCTTACAGTTTCAAGCAGCTGTTCCTTTCATCAGCCAAAAGTTATTTGACACGAAAGACATTTTTCCAAATGCCTTTGTGTTGAGCTGTCAGTGTCTCGtacttctttaaaataatttacctCATAATGAGGTTTTGCACTAATACCCTCTCTGGTCTCAGTCATAGCTACTTTTTTGCTTTGAGTGCATTTCTGCAATAGCTTGGTGTGACCTAAAAGAAGTACTGTATACAATATTGTGGAGAaatgttgttattgttcttaATAACACTAGCAAACTAGCTGATAACATGTTGCACTTCTTTATGAATTATATTTCTTCAGGTTGACGAACCTTCTGTATAGTGTTAATTTGTGGCACTTTatctgatttgttgtttttatcccGGAGGGTGCCAAAACCTATGAATATAACAATATTAGTACTTGTATTGGGTAACCAGTAGGTACGGCCAAATAAGGAAATGGCTGCAAGATGCAGTAAAAAATACTCACTGAGATTGAGATCATCAAGCCAATTGTCCTTCATTATTAATGAGGCCGTGGATCGGGGTGCCTTTTCAGACAAATCGCTTCCCTTTTTGTCCCcagattgtgttttctgttcaaGTTCTGTGTGGTTTGAAGCCAACAGCTTGAAGCTGAAAAAAACTTGCCAAATAAAGAAGTGAATCTCAGTGAGATCTTCCCCAAGGAGAATCATCACACATGAATCATAAATTGACATAAAAATGCTAAATTGAATCTGAAACTACAAAGATCTTAAAGAGCATACTAGTCCTAGTTGTAATGCTAATTGCCTTTACATGTAACCCATTTAGCTTAATATTGGAGGTCTATTTCCCTTTCCTGAGTAGGTTTAGCATTCTTCTCACCGCTACTTATACTGTTTGGTTTCAGTTGTATTGCtcagtttttgctttttgacataCATTTGCCAATATGTATGCTTCATAAGTTCcactacttttttatttttccaaacctatgtaaaaaaaaaaaataaaaataaaaaaagtttctttACATTGTGTGTAGTTCAGTTGAAGCCTTGCTGTATGATACTTTACAGGACTAGATGTCAGGTTCTTTGCATTGAAGGCTTCAGATCTGCTGGAAGACACAGGAGTGTAAGAATctactttaatttgtttttcctattttcctTTGACTTTCTCATTTCAGTTACTTAAAGGAGAAGGTGAATTACtcatggttaaaaataaatccagtggAAAAAGAATCTCTCTCCAGTGCATTGAACTGACTGTCAGGCTTTTTTTAACTGCCATTTTAGATGGCTTGCTGTATGGaaactacacatttaatttaacttcatGAAAGTAAATTCAATGGCACAATATCTGAGGGAGTCATGGATTTacttgtaataaaaatgtattgatggaTTGTAAAGCAGTCTCACAAAAGTAGAATAAAATCTGAatcaagagggagagaggagagggcaGAGTAAAAGCCTTACAGACTGCTTTCTTTTGAAACCTTGCTGAAATGTGGATGTCCACAAAGCCTTTAAACATAATGGATTTCAGTAGGGTTTCCCAGATTTGTTGCTCATTTTTCAATCTCCCCAGAACCGTCAGTTAGAAGTCTGATATTTGCATCAGTCCCGTTAAAGCATATGGAGGATAACGGTAAACCCAAGCGATCATCCTTGTTATGGTGC

Function

symbol description
bmt2 Predicted to enable S-adenosyl-L-methionine binding activity. Predicted to be involved in cellular response to amino acid starvation and negative regulation of TORC1 signaling. Predicted to act upstream of or within methylation. Is expressed in female organism. Orthologous to human BMT2 (base methyltransferase of 25S rRNA 2 homolog).

NR:

description
PREDICTED: probable methyltransferase BTM2 homolog isoform X3

GO:

id name namespace
GO:0031167 rRNA methylation biological_process
GO:0016433 rRNA (adenine) methyltransferase activity molecular_function

KEGG:

id description
K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006556 True 4133 mRNA 0.43 6 8746594 8794059

Neighbor

gene id symbol gene type direction distance location
AMCG00006558 gpr85,LOC106576049 coding upstream 18268 8727643 ~ 8728326 (+)
AMCG00006551 NA coding upstream 86301 8644242 ~ 8660293 (+)
AMCG00006546 NA coding upstream 502557 8222881 ~ 8244037 (+)
AMCG00006540 ube2h,LOC105888480,LOC107676921 coding upstream 711762 8026690 ~ 8034832 (+)
AMCG00006539 NA coding upstream 746072 7993931 ~ 8000522 (+)
AMCG00006555 NA coding downstream 5683 8799742 ~ 8807859 (+)
AMCG00006557 NA coding downstream 80414 8874473 ~ 8885595 (+)
AMCG00006561 dock4,LOC106609220 coding downstream 118221 8912280 ~ 9009240 (+)
AMCG00006560 NA coding downstream 242412 9036471 ~ 9059363 (+)
AMCG00006566 NA coding downstream 680741 9474800 ~ 9476828 (+)
G110447 NA non-coding upstream 566906 8179441 ~ 8179688 (+)
G110446 NA non-coding upstream 567866 8178521 ~ 8178728 (+)
G110444 NA non-coding upstream 571021 8173328 ~ 8175573 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding upstream 611102 8133095 ~ 8135492 (+)
G110429 NA non-coding upstream 656467 8088037 ~ 8090127 (+)
G110523 NA non-coding downstream 1001 8795060 ~ 8795331 (+)
G110558 NA non-coding downstream 93627 8887686 ~ 8888492 (+)
G110590 NA non-coding downstream 662606 9456665 ~ 9456911 (+)
G110681 NA non-coding downstream 1236367 10030426 ~ 10031846 (+)
G110722 NA non-coding downstream 1575656 10369715 ~ 10369931 (+)
AMCG00006552 NA other upstream 22528 8710750 ~ 8724066 (+)
G110445 NA other upstream 569808 8175760 ~ 8176786 (+)
G110279 NA other upstream 1091400 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 1834340 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 2158195 6519865 ~ 6588399 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 769893 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 3351686 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 3826003 12620062 ~ 12651815 (+)
G111197 NA other downstream 4217125 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 5139607 13933666 ~ 13939475 (+)

Expression


Co-expression Network