AMCG00006559 (LOC102797044,LOC102787037)


Basic Information

Item Value
gene id AMCG00006559
gene name LOC102797044,LOC102787037
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8887691 ~ 8912003 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006559
GTTCGGCTTCTCTGATTGGTTCGCTGGGCCCGTTCGGCTTCTCTGATTGGTTCGCTGTCACCGATTCTGGATGACGTGGCACCCTGGTGGAAAGCATGGCTGCCGCTCATATAGAGAGAAACATTGCAGAGGGGCAGGACTCGATTCTGGAGCCATTGTCTTTACCGGAAAGTCCAGCCATCAATGTATCTGCAGACAGGGGCGCACCGGTCCCCTGCATCCTGTGCTCAgagtctttctctctgtctgaaaCGGAAACGCTTCTGAAGCACTTCATCCTCGAACACAGACTGGTGATCGGCGACGTCAAACTCATCGCTGACTTTCGGAGatacATCCTGTACTGGAGGAAAAGATTTACcgagcagccaatcacagagttCTGCAGTGTGATCAGGACCAATGCACAAGCCCCCGTCGAACGGCAAGAGGATTACTTCCTTTTGTGTGATGTTTTACCAGAGGATAGAGTTCTCCGAGAGCAGCTCCAGCAGAAGAGACTTGAAGAGATCCTGGACCAGCAGCAAAAGGAGAGGGATGACTCCAGTTTCCACCGGGCCTGTATGTTCTGCAGTGAGGACTTCTCTGGAAACAGGTCGCTGCTTCTGAACCACATGGCGAAAGAACATGGATTCAATGTTGGGCTTCCAGACAACATTGTCTACTCTGAAGAGTTTCTGGACACACTGCAGGGGAAACTAGACAATTTgcagtgtctgtactgtgagaaGACCTTCCGCGACAAGACCACCCTGAAGGACCACATGAGGAAAAAGCAGCATCGCCGGATCAACGCTAAGAACCAGGAGTACGACCGCTTCTATGTCATCAACTACCTGGAACTTGGGAAGACATGGGAAGAAGTTCAGTCCGAAGATGACCGTGAGATGATGGAAGATCACGACGACGATTGGTCTGACTGGCAAGAACACCCTCTGTGTGCCGTCTGTCTTTTCTGTGATCATCAGTCGGAGACCATGGACGAGATCTACAGCCACATGGAGGAAACGCATGGTTTTGATCTTCATAAATTAAAGGCAGAATTAGGTCTGAGGTTTTACCAGCAGGTGAAGTTGGTGAATTTCATCCGACGGGAGATCCACCAGTGCCGATGCTATGGGTGCCAACAGAAGTTCAGCTCTAAGGCCGAAGTTCTGCTGCATCTGACGGAGGCAAAGCATGTCATGGCACTGCCAGAGATGTCCAAGTGGGATCAACCCCAGTATTATTTCCCGACCTATGAGAACGACGCCTTCCTCTGCGCCCTGTCTGACAGCGAGAACGAATCGGAAGGCGCTGGAGATGGCAGAGACGTCCCTGTAATTGCTGAAGACATTTCAAACCTGAAAGCTCTTAAGCAGACAAGTGTACTGAAACAGTTGCTCAAAGGGAAGAACAGCACAAGCTAGAGTAAAGAGCAGTGTGTTctgttgtttgtctgtgtgtccgtGATGAATACATTTGGCACCCACATTGGGATGGAACCTGATTAACTGGGAACTATAAATGCTGTTTCACAAGTATTTAAAAGAAGTGTCcccaaatattttattacttttttttgtaaatgcttaAATATCATGGTCTCTGTATTCTATCCTCTCCGAATCTTTATTACACTGCCTTGAGAACTTGAAACCCTCTGATTAATGTATCAATAAAATCTGTAAATATGAa

Function

NR:

description
PREDICTED: zinc finger protein 277-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006559 True 1677 mRNA 0.48 12 8887691 8912003

Neighbor

gene id symbol gene type direction distance location
AMCG00006554 NA coding downstream 18169 8858345 ~ 8869522 (-)
AMCG00006553 NA coding downstream 31017 8851743 ~ 8856674 (-)
AMCG00006550 foxp2 coding downstream 375069 8477343 ~ 8512622 (-)
AMCG00006549 mdfic,si:ch211-262n1.4,LOC107656347,LOC107658868,LOC107584008 coding downstream 463093 8419388 ~ 8424598 (-)
AMCG00006547 tmem209,LOC102778061 coding downstream 704137 8174241 ~ 8183554 (-)
AMCG00006562 LOC105007066,LOC106576072,LOC106609221 coding upstream 283433 9195436 ~ 9197467 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding upstream 659486 9571489 ~ 9587506 (-)
AMCG00006570 NA coding upstream 676928 9588931 ~ 9592122 (-)
AMCG00006573 NA coding upstream 693535 9605538 ~ 9606425 (-)
AMCG00006572 NA coding upstream 712082 9624085 ~ 9625892 (-)
G110369 psmc2 non-coding downstream 978463 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 1130839 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 1319532 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 1320124 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 1329223 7558205 ~ 7558468 (-)
G110576 NA non-coding upstream 98137 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 564479 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 1392928 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 1509558 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 1691092 10603095 ~ 10603733 (-)
G110520 bmt2 other downstream 93629 8783905 ~ 8794062 (-)
G110507 NA other downstream 163339 8722388 ~ 8724352 (-)
G110195 NA other downstream 1780553 7078389 ~ 7107138 (-)
G110140 NA other downstream 2101840 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 2844767 6014104 ~ 6042924 (-)
G110570 LOC106576073 other upstream 85634 8997637 ~ 8999264 (-)
G110605 NA other upstream 633492 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 1175272 10087275 ~ 10107285 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 3105866 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 3137491 12049494 ~ 12069660 (-)

Expression


Co-expression Network