AMCG00006561 (dock4,LOC106609220)


Basic Information

Item Value
gene id AMCG00006561
gene name dock4,LOC106609220
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8912280 ~ 9009240 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006561
ATGTGGATACCTACAGAACACGAAAAATACGGCGTCGGCGCTCTCACATTAGAGATGTACAGACTTGCGGTCCTTGCAAACGTCTTCAGCACATATGtgctgGCCAGTTTTCGAGGGACGGTACAACATGGCTTGTCACTGGAGATTGGCGACACCGTACAGATTCTGGAGAAATGCGaaggcTGGTACAGAGGATTCGTTCTTAAGAATCCAAATGCTAAGggAATTTTCCCCTTGAGCTACATTCACCTGAAAAATGCGAATATCAAGAACAAAGGGCAATTTGAAACAGTCATTCCTACAGAGGATTCGGTTATCACTGAGATGACATCAACTCTGAGGGACTGGGGCACCATGTGGAAGCAGCTTTATGTGAAAAACGAGGGGGACTTGTTCCACCGGTTGTGGCATGTAATGAATGAGATATTAGACCTGCGCAGGCAAGTTCTTGTGGGCCACCTGACTCATGACCGAATGAAAGATGTGAAGCAGCACATCACCGCACGGCTCGACTGGGGAAACGAACAGCTGTGCTTGGATCTTGTCCCAAGGAAAGAGTTCAGCATGGTAGACCCAGATGAAATCAGCGTTACAGAGCTGTATAAACTGATGAAAAGCCTCATGTCCtccaacctgggagaagaactCGAGGTTTACTTTTCCATCTATGACAGCAAAGAGAACCGCCCGATCAGTGAGAGATTCTTTGTGCGACTGAATAAGAACGGCTTACCAAAGTCACCGGAGAAAACCGAGAGACAATGCACCCTGTTTGTAGATTTGGGAAGCAGTGACCTACGAAAAGATGTGTATATCACCGTTCACATTATAAGAATAGGGCGGATGGGAGCGGGAGAGAAGAAGAACGTGAGCAATGTGCAGTACAGGCGTCCCTTCGGCTGTGCGGTAATCAGCATAGCGGACCTCTTGACCGGGGACTCGAAAGACGACCACATTTTGAAGGTTTACACGTGCAACACGGAAAGTGAGTGGTatcaaatacatgaaaacattatCAAGAAAGTGAATGCCCGTTACAACCTCACCGGCTCCAATACTGGTCTTGCAGTTTCTCTTCAGCTGCTCCATGGAGACATCGAGCAGATCCGACGAGAGTACATGGTGCTCTTTACTCGTGGTGTTGCGATCACAAAGAAACTGGGCTTCTCTGATATCATCATGCCAGgGGAAATGAGAAACGATCTGTATGTCACTTTGGAAAAAGGAGAGTTTGAGAAAGGTGGAAAGAGTGTAGCTAGAAATGTCGAGATCACAGTTTTTCTCTTGGATTGTGATGGCCAGGTGCTGAAGAACTATGTGTCAGCAGGCTCTGGAGAACCAGCAGGCGATGAGTTTCACTCGTTCGTGCTTTATCACAACAACAGCCCCAGATGGGCCGAGCAGATAAAACTGCCTATCCCTGTGGATAGGTTTCGAGGATCGCATGTCCGTTTCGAGTTCAGGCACTGCTCCAcAAAAGAGAAGGGGGAGAAGAAGCTGTTTGGCTTCTCCTTTGTCCCATTGATGCAAGAGGATGGCAGGACCCTGCCAGATGGGACCCACGAGCTCATTGTCCACAAGTGTGAAGAAAATGCAAACCTCCAGGAGTCTGCTCGCTACCTCAAGCTGccattttcaaaaggaaatctCCCAGGAAACAATCAGGCTGTGAAAACCACTAAGGAGTCGTTCTGGATCACATCGTTTCTCTGCTCTTCTAAACTCACACAAAATGGTGACATGCTTGATCTCCTTAAGTGGAGAGCTCACCCTGACAGGATAACTGACAGCCTGTCCAAATTAAAGGAGATTGATGGCTCAGAAATTGTGAAGtttttacaagaTACACTGGATACTCTATTTGGAATTTTAGATGAAAATTCTCAGAGATACGGGTTGAAGGTTTTTGATTCCTTAgTTCACATTATAAATTTGCTGCAGGACAGCAAATTCCAGCATTTTAAACCAGTCATGGATACCTATATTGAGAGTCACTTTGCAGGCGCTCTGTCGTACAGGGACCTTATTAAGGTACTGAAGTGGTATGTTGACAGAATAATCGAAGCTGAACATCAGGAACACATTCAACAGGTGCTCAAGgCCACAGAAtacatctttaaatatattattcagtcTCGTCGCCTGTTTTCCCTGGCCACCGGAGGCCAGAACGAAGAGGAATTTCGATGCTGCGTTCATGAGCTTTTCATGTCCATCCGATTCTTCCTTTCTCAAGAAAGCAAAGTGGCTAGTCCCATTACCCAAACTCAGACCTTCCCAGCGGTCTACTGCGAGCTACTGAAGATCTTCAACGTTCGGGAAGTGGCGAACTTTGTCAGAGAAACCCTGGGCAGTCTGCCAGTGATCGCACATGCCGATTGCCCCCTGGAAGCTGTTAAACTGCAGTGCATTGCAAAAACAGTGGAGAGCCAGCTGTATACCAACCCCGATTCCCGCTGCATCCTTCTGCCAGTGGTTTTGCACCATCTACAGATGCATCTGCAGGAGCAAAAGGATCTGGTGATGTGCGCGCGCATACTGAGCAGTATGTTCTCTCTCATCAGGAAAGACGGCACAACAGAGGTGTCAATTTCCGAAGAGGTGGATTTGATTGTGGAGAGCCTGTTGGGCGTGTTGCTGAGAACCATATTAGAGATCACCAACCGACCACAGCCAGCTGGAACGGCCCTGCGCCTGCAGTTCCAGGACGTCACGGGGGAATTTGTGGCTTGTTTGCTGGCTCTTCTCAGACAGATGACAGATAAACACTACCAACAGCTCCTGGAAAGCTTTTCCAACAAAGACGACCTGAGGGATTTCCTCTTGCAGATCTTTACGGTGTTTCGGATTCTCATCAGACCAGAGATGTTCCCAAAAGACTGGACTGTCATGCGGTTGGTCACCAACAATGTAATCATCACTACGGTGCTGTACCTGTCAGATGCTCTGCGCAAGAACTTCCTGAATGATCATTTTGACTACAAGgTGTGGGATTCCTATTTTTACCTCTCTGTAATATTTATAAACCAACCCTGCCTCCAGCTGGAAACCTTCTCACcatccaaaaagaaaaaggttttagAAAAGTATGGCGACATGAGAGTCATGATGGGATGTGAGATCTTTAGCATGTGGCAAAATCTCGGGGAGCACAAGCTGAATTTCATCCCTGCCATGATCGGGCCCTTCCTGGAAGTGACGCTCGTCCCGCAGCCCGACCTGCGCAACGTCATGATCCCCATTTTCCACGACATGATGGACTGGGAGCAGCGCAGGAGTGGCAGCTTCAAACAGGTTGAAGCCAAACTGATAGACAAACTGGACAGCCTGATGTCTGAGGGCAAGGGGGACGAGACCTACCGGGAGCTTTTCAACAGCATTTTGCTAAAGAAGATTGAGAGGGAGACGTGGAGAGAGAGTGGCATTTCCTTAATAGCCACCGTCACCAGGCTAATGGAGAGACTCCTGGATTACAGGGACTGTATGAAGGTGGGAGAAGTGGATGGCAAAAAGATTGGTTGCACAGTTAGCCTTCTGaaTTTCTACAAAACAGAATTGAACaaagaagaaatgtatatacGGTATATACATAAATTGTACGATCTTCATTTGAAAGCACAGAACTACACGgAGGCCGCctacacactgctgctgtacgATGAGTTGCTGGAGTGGTCTGACCGGCCTCTCCGAGAGTTCCTCAATTACCCCATGCAGACCGAGTGGCAGAGGAAAGAGTACCTGCATCTCACCATCATCCAGAACTTCGACAGGGGAAAAATCTACGCCGTCGGCCCCATCCCGGAGAGCCAGGACGTGCTGCAGAGGGACGGGGTGCCAGACAACATTAAGAGCTTCTACAAAGTCAACCACATCTGGAGATTCAGATACGACAGGCCTTTTCACAAGGGCACAAAGGACAAGGAAAACGAATTTAAGAGCCTGTGGGTGGAGCGCACCACGCTCACGCTGGTGCAGAGTCTGCCTGGCATCTCACGCTGGTTCGAGGTGGAGAAGCGAGAACTGATTGAGATGAGCCCTTTGGAAAACGCCATCGAAGTGATCGAGAATAAAAACCTGCAGCTGAGGACCCTCATTACTCAGTGTCAGGCTCGACAGATGCAGAATATCAACCCACTCACCATGTGCCTGAATGGAGTCATTGACGCCGCCGTCAACGGGGGACTCGCCAGATACCAAGAGGCATTTTTTGTAAAGGACTACATCATAAATCATCCTGAGGATGGAGAGAAGATTGGACGGCTGAGAGAGCTCATGTTTGAGCagGCTCACATCCTGGAGTATGGGTTGGCTGTGCATGAGAAATTTGTACCTCAGGACATGCGACCTTTACATAAAAAATTGGTTGATCAGTTTCATCTAATGAAATCAAGTTTAGGAATACAGGATTTTCCAGCGTATGTCCGTGCTAGTCCTGTTCACTTCACCAATGGTAGTCCACGTATATGCAGAAATTCAGTGCCTAATGCCATAAGTCCCGATGGTGCTAGAGTCATAGCACGGCGCAGCCCCCTGAGCTACCCAGCTGTGAACAGATACTCCTCGTCGTCTCTCTCGTCACAAGCCTCGAATGAAGTCAGCAACATCACCGGGCAGTCGGAGAGCTCAGACGAGGTCTTCAACATGCAGCCCAGTCCGTCTACCTCAAGCTTAAGTTCGACTCATTCGGCCTCTCCCAACGTGACCAGCTCTGCCCCGTCCAGCGCTAGAGGTTCACCGTTGTTGTCCGATAAACACAAGCACTCCAGAGAAAATGCCTGCCTCTCGCCCAGGGATCGGCCCTGCAGCGCTGTGTACCCCAACCCTCAGGACCCCACGCAGAGAATGATCACTCATCAGATAGGAGAGAACTCCCTGCCGAGGAGTGATCCAAATCTTTCCACACCAGAGAAAGTAGTGAACCCCACCCCGAGTAGCTGGAGTCTAGACAGTGGTAAAGAAGCTAACACACAATTTTCAGAAACTGTTGGGAAGTTGGTATCCCCACCTGTACCACCTAGGCCTCAACACCAAGGTAAAAACAACTACGAAAAGGCAAAAGAATAA

Function

symbol description
dock4 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm. Orthologous to human DOCK4 (dedicator of cytokinesis 4).

NR:

description
PREDICTED: dedicator of cytokinesis protein 4-like isoform X6

GO: NA

KEGG:

id description
K17697 DOCK4; dedicator of cytokinesis protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006561 True 5067 mRNA 0.48 48 8912280 9009240

Neighbor

gene id symbol gene type direction distance location
AMCG00006557 NA coding upstream 26685 8874473 ~ 8885595 (+)
AMCG00006555 NA coding upstream 104421 8799742 ~ 8807859 (+)
AMCG00006556 bmt2 coding upstream 118221 8746594 ~ 8794059 (+)
AMCG00006558 gpr85,LOC106576049 coding upstream 183954 8727643 ~ 8728326 (+)
AMCG00006551 NA coding upstream 251987 8644242 ~ 8660293 (+)
AMCG00006560 NA coding downstream 27231 9036471 ~ 9059363 (+)
AMCG00006566 NA coding downstream 465560 9474800 ~ 9476828 (+)
AMCG00006563 bpgm coding downstream 470263 9479503 ~ 9484141 (+)
AMCG00006564 NA coding downstream 520993 9530233 ~ 9560060 (+)
AMCG00006568 NA coding downstream 583152 9592392 ~ 9595123 (+)
G110558 NA non-coding upstream 23788 8887686 ~ 8888492 (+)
G110523 NA non-coding upstream 116949 8795060 ~ 8795331 (+)
G110447 NA non-coding upstream 732592 8179441 ~ 8179688 (+)
G110446 NA non-coding upstream 733552 8178521 ~ 8178728 (+)
G110444 NA non-coding upstream 736707 8173328 ~ 8175573 (+)
G110590 NA non-coding downstream 447425 9456665 ~ 9456911 (+)
G110681 NA non-coding downstream 1021186 10030426 ~ 10031846 (+)
G110722 NA non-coding downstream 1360475 10369715 ~ 10369931 (+)
G110849 NA non-coding downstream 2111150 11120390 ~ 11120735 (+)
G110883 NA non-coding downstream 2340644 11349884 ~ 11350117 (+)
AMCG00006552 NA other upstream 188214 8710750 ~ 8724066 (+)
G110445 NA other upstream 735494 8175760 ~ 8176786 (+)
G110279 NA other upstream 1257086 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 2000026 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 2323881 6519865 ~ 6588399 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 554712 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 3136505 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 3610822 12620062 ~ 12651815 (+)
G111197 NA other downstream 4001944 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 4924426 13933666 ~ 13939475 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000335_00681430_00741137 DOCK4B, DOCK4 coding CI01000335 null 681430 ~ 741222 (+)