AMCG00006562 (LOC105007066,LOC106576072,LOC106609221)


Basic Information

Item Value
gene id AMCG00006562
gene name LOC105007066,LOC106576072,LOC106609221
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9195436 ~ 9197467 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006562
ATGACTGCTTTTGTACTTGCCACTGAGAAGAAAGTGGATTGCCCCcagtcctgtgtgtgtgaaatcaGACCATGGTTCACTCCCAACTCTATTTATATGGAGGCCCCTACCATCGACTGTAATGATTTaggactttttattttacccGAGAGATTACCTGCCGACACACAGGTCATTTTGCTACAGACTAACAACATTGACAAAATTGAGAAACCCTTGGATTATCTGGTCAACATCAGTGAGATAGACTTATCTCAAAACAATTTATCCTCAATGAGTGATATCAATCTCGGACAGCTGCTTCAACTTTTGTCTCTGCACATGGAGGAAAACAAGCTACACACATTGCCTGACGACTGCCTGCACAAACTGACCAATCTGCAGGAACTATACATCAATCACAACCTGATCTCTGTTATCACTCCCGGAGCCTTCACGGGCCTACGCAATCTGCTCCGGCTCCATCTTAATTCAAACAGGTTGCAGATGATCAGCAGCAAGTGGTTTGAGGCCACTCCAGGACTAGAGATTCTGATGATTGGGGAAAATCCAATCATCAAAATCCAAGATATGAACTTTAAGCCGCTTATCAATCTCCGCAGCCTGGTCTTAGCGCGAATGAATCTCTCCGAATTACCTGACAATGCTTTAGTTGGCCTTGATAATTTAGAGAGCATCTCGTTCTATGACAACACGTTTGCTAAAGTCCCCCGTGCGGCTCTGCAGCAGGTCCAGAGCCTCAAGTTTTTGGATCTGAACAAGAACCCCATTCAGAGAATACAAAGAGGAGACTTCATGGATATGCTACACTTAAAGGAACTGGGGATAAATAACATGCCAGAACTGGTTTCTATCGATAGCTTTGGCCTTAATAATTTGCCCGAACTGACGAAAATAGAAGCAACCAACAACCCCAAGTTATCATACATCCATCCAAATGCTTTCTACAAACTACCCAGGCTAGAAACACTTATGCTCAACAGCAACGCCCTGAGTGCCCTATACCGGATTACAGTGGAATCTCTGCCCAACCTCAGAGAAGTCAGCATGCACAGTAATCCCATCCGCTGTGACTGTGTCATCCGCTggataaatatgaataaaactaACATTCGGTTTATGGAGCCAGATTCTTTGTTCTGTGTTGAACCGCCTGAGTACGAAGGCCAGCATGTTAGGCACGTGCACTTCAGAGAAATGATGGAAATATGCCTGCCGCTCATCTCACCGGAGAGTTTTCCTCctcacataaatacaaaaaacggGAGTTCTGTTTCGCTACACTGCCGTGCGTTTGCAGAGCCAGAGCCGAACATCTACTGGATCACACCTTCTGGGAACAAAATCTTGCCTAATACAGTTTCCGACAAGTACTACATGCACCCCGAAGGAACGTTTGATATCTATGACATTACGGAACACGAAGCTGGATTGTACACCTGCGTGGCTCACAATCTTGTCGGAGCTGACCTTAAAACCATTTTGGGATGCCTGCAGCCGTAG

Function

NR:

description
PREDICTED: leucine-rich repeat neuronal protein 3

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006562 True 1503 mRNA 0.45 2 9195436 9197467

Neighbor

gene id symbol gene type direction distance location
AMCG00006559 LOC102797044,LOC102787037 coding downstream 283433 8887691 ~ 8912003 (-)
AMCG00006554 NA coding downstream 325914 8858345 ~ 8869522 (-)
AMCG00006553 NA coding downstream 338762 8851743 ~ 8856674 (-)
AMCG00006550 foxp2 coding downstream 682814 8477343 ~ 8512622 (-)
AMCG00006549 mdfic,si:ch211-262n1.4,LOC107656347,LOC107658868,LOC107584008 coding downstream 770838 8419388 ~ 8424598 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding upstream 374022 9571489 ~ 9587506 (-)
AMCG00006570 NA coding upstream 391464 9588931 ~ 9592122 (-)
AMCG00006573 NA coding upstream 408071 9605538 ~ 9606425 (-)
AMCG00006572 NA coding upstream 426618 9624085 ~ 9625892 (-)
AMCG00006580 NA coding upstream 871555 10069022 ~ 10084834 (-)
G110576 NA non-coding downstream 181110 9010140 ~ 9014326 (-)
G110369 psmc2 non-coding downstream 1286208 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 1438584 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 1627277 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 1627869 7567204 ~ 7567567 (-)
G110594 NA non-coding upstream 279015 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 1107464 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 1224094 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 1405628 10603095 ~ 10603733 (-)
G110917 NA non-coding upstream 2474102 11671569 ~ 11672483 (-)
G110570 LOC106576073 other downstream 196172 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 401374 8783905 ~ 8794062 (-)
G110507 NA other downstream 471084 8722388 ~ 8724352 (-)
G110195 NA other downstream 2088298 7078389 ~ 7107138 (-)
G110140 NA other downstream 2409585 6785313 ~ 6785851 (-)
G110605 NA other upstream 348028 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 889808 10087275 ~ 10107285 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 2820402 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 2852027 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 2873923 12071390 ~ 12130383 (-)

Expression


Co-expression Network