AMCG00006571 (dnm1l,LOC107716704,LOC106561645)


Basic Information

Item Value
gene id AMCG00006571
gene name dnm1l,LOC107716704,LOC106561645
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9571489 ~ 9587506 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006571
CCAGAATGCACCGCCCCCCAAAGCGTACTGCAGTTGTTCCCTGGGCCGGGTTGGTTAAATGGTGGCTGTGTGAGGGACATTGGATGACTTTCAGTGCCTGTGTTTAGCCGGGTTATCCATTCATTTTCTCCACTCCCTGTTTCCTTGAACCATGGAGGCGCTTATCCCTGTAATAAACAAACTGCAGGATGTCTTCAACACAGTGGGAGCCGATATTATCCAGTTGCCGCAGATTGCAGTAGTGGGGACACAGAGCAGTGGCAAGAGCTCGGTGTTGGAGAGTCTGGTGGGCAGAGACCTCCTCCCCCGTGGCACAGGGATCGTAACGCGCAGGCCCCTCATCCTGCAGCTTGTCCACCTCGCGGCCGAGGACCGCAGGAAAACCGGTGAAGAGAATGACCCCAACTCATGGAAAAATGGGCGCCTTTTCCAAGGTGTGGAAAGCGAAGAGTGGGGAAAGTTTCTACACACGAAAAATAAGATCTACACAGATTTTGATGATATCAGACAAGAGATTGAAGCCGAAACTGAAAGAATATCTGGCAATAACAAGGGTATCAGTGATGAGCCAATCCACCTAAAAATCTTCTCTCCTCATGTGGTCAACCTCACTTTGGTGGATCTACCAGGAATCACAAAGGTCCCTGTGGGTGACCAACCCAAAGACATTGAGATCCAGATCCGTGACCTCATCCTGAAGCACATAAGTAACCCTAACTGCATCATTCTGGCCGTGACCGCAGCCAACACGGACATGGCCACCTCGGAGGCACTCAAAGTAGCTCGGGAGGTGGACCCTGATGGACGGAGGACATTGGCTGTTATAACCAAACTGGATTTGATGGATGCAGGGACTGATGCCATGGATGTGTTGATGGGTCGAGTCATTCCAGTCAAACTGGGTATAATAGGAGTTGTCAATAGGAGCCAGTTGgacattaacaataaaaaatctGTGGCCGACGCTATTCGTGATGAATATGCCTTTCTGCAGAAGAAGTATCCCTCTCTTGCCAACAGGAATGGCACCAAATATTTGGCTAGGACTTTAAACAGGTTACTAATGCACCACATTCGAGACTGCCTGCCTGAACTTAAGACCAGAATCAATGTGCTGGCGGCCCAGTACCAGTCTCTGCTCAGCAGCTACGGAGAACCTGTGGAAGACAAGAGCGCGACCCTCCTGCAGCTCATCACCAAGTTCGCCACCGAGTACTGCAACACCATCGAGGGCACGGCCAAGTATATTGAGACTACGGAGCTGTGTGGCGGGGCTCGAATCTGCTACATTTTTCACGAAACTTTTGGACGAACATTAGAATCGGTTGATCCCTTAGGCGGCCTGACAACCATAGACGTTCTGACAGCTATCAGAAATGCCACGGGACCTCGCCCCGCCCTGTTTGTGCCTGAGGTGTCCTTTGAACTGCTGGTGAAGCGGCAGGTGAAGCGCCTGGAGGAGCCCAGTCTGCGCTGCGTGGAGCTGGTCCACGAGGAGATGCAGAGGATCATCCAACACTGCAGCAACTACAGCACCCAGGAGTTGCTGCGATTTCCAAAGCTCCATGATGCCATCGTAGAGGTGGTCACATCCCTGCTCAGGAAAAGGCTACCCGTTACCAATGAGATGGTGCATAACTTGGTGGCGATTGAGTTGGCTTACATCAACACCAAGCACCCTGACTTTGCTGATGCCTGTGGACTAATGAACAACAATATCGAGGAACAGAGACGCAACCGAATGCGAGAGTTACCGTCTGCAGTGCCCCGTGATAAGTCCTTTAAAGCTCCTGGTGGGCAGTCTCTCTATCCTCTAGACCCCCCCGCTGCCCCTTCGGTGGAGGCGGAGGGTGCTAAGGGCGCCGGGGCTCAGGGGGACCAGGAGGCAGGCACAGGAAACTGGAGAGGGATGCTGAAAGCGTCAAAAGAAGACTGGACATCCGAAGAGAGGACCAAACACCAGTCTTCACTCCCTGCCAGCCCCCAGAAAGGCCATGCTGTCAACTTGCTAGATGTGCTTTCTGCCAGGGAGCAGCGTGACTGCGAGGTCATCGAACGGCTCATCAAGTCCTATTTCCTGATCGTCAGGAAGAACATCCAGGACAGTGTGCCAAAAGCGGTGATGCACTTCCTGGTCAACCACGTGAAGGACAGCTTGCAGAGTGAGCTGGTGGGACAACTCTACAAGTCCTTGCTGCTCGATGACCTTCTGACAGAGTCTGAGGACATGGCCCAGCGTCGCAACGAGGCGGCAGACATGCTGAAGGCCCTGCAGAAAGCCAGTCAGATCATCGCCGAGATCCGAGAGACGCACTTGTGGTGAAGATCCCAGAATCCCGTCTGTCGAGGATGTCTTTGACTTTGAGACGGCCAACTTGAAAATGCACTGTTGTTGATGTGTGTGCCGGGCATCATTTTATTTACGAACTCTCAGCTACATGAAGGCTATTTGCATATCATACTTCACCTACATCAGCAATGTCCTGTGAAATGGGTTCATACTTCAGTCCATATACAATATAAGTCTCATTGTAGTGTGGCTTATCAATGAAAGCGATTTTTCTTATGTAGCTTAAATTAAAAGTGATAATAAACTTATCTGTGCAGTGTGATTTGGGTTGATCACGTACAACCTTCATTCAGTAAATAAGACTGATTTCTAGAGAATccaaatagttttgtttttttacttcataaTGCAAAAATGTGTATGCAGTTCATCTTATATATAGATAAGCATTCAGTAGCTCCATGATACTTTTAAAACTGCAATTGTGGTTGAAATGGTTCAGTGGGTCACAAAAGCTATAGGATAgctataagaaatatatatatagctataagAAAACCGTAATGTTTTAGATCAAATAGTTTCCAATACAATGAGACCATGCTGCAGGTTTGTTCATAGCAGCTACCGGACCTTGATTCTTGAAAGTTGTATAATTTGTCAAAAGACtgagatgttttgtttattttttacagatgaGGTGACATTTAGCTTCATGCCAAACAGGGTGTGCTTTGATGATATAGTGGTGTGCTGGCACAGATGTCTTTGCTAGACTGTGTAGGAACCAGGAAAACGGAGCGCATGGCAAGAAAGTGGCGCATCTTTACACAGAGACATGTCTGTGGATATATTTTCGGAGTAAATTTAATATAATGACTTGTGAATTTGTAGCCTGAAACCTGAAACGAGGTGCACAGAAGATGCTATCATTCATTACTGTGGTTATGGACTTGCAAAGGAGACCCATAcagaatttttaaatattttttttttcactgccGTTGTGTGATTTCACTCTCAATCCCCTTACAGTCTCAATCTTGTTACACCATGAAATTTATTCGGCGGTTGCTAATGAGCCGTTAAGGCCTTGTGACCTGAACTAAGCAGAAGCAATTCCCCCCTCTCCTCAGCTCTCCGTAATGAGAGCTGAACCAGCTCGTACGCACGGCCCGGTGACCAAATTGATGTGCACAATAGGACCTAAACCCAGACTGGCATTTGTTACTCTGGGTTTTAAAGTGCTCTTTCACCATCTGTCTTTGTTCTTGCCCTTTCTTTTGCATGTCGGATTtagttttatgtgtgtgtttttcccacCTGCCACATTTTGCTTCAAGAGAACTACTTACTCCACTACTCCTTATCAAGAGCTCAGATATCCTTCCATTATCACTACTGAGTTTACGGATTTGAATGATGCGTGTATTGTACTGCTTTTCTTTAAAGTTAATAAAGTATAACTTACAGGGTGAAA

Function

symbol description
dnm1l Predicted to enable GTPase activity; microtubule binding activity; and protein homodimerization activity. Predicted to be involved in mitochondrion organization and protein-containing complex assembly. Predicted to act upstream of or within peroxisome fission and rhythmic process. Predicted to be located in cytosol; mitochondrial outer membrane; and peroxisome. Predicted to be active in membrane; microtubule; and mitochondrion. Is expressed in brain. Human ortholog(s) of this gene implicated in encephalopathy due to defective mitochondrial and peroxisomal fission 1 and optic atrophy 5. Orthologous to human DNM1L (dynamin 1 like).

NR:

description
PREDICTED: dynamin-1-like protein isoform X1

GO:

id name namespace
GO:0003374 dynamin family protein polymerization involved in mitochondrial fission biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0000266 mitochondrial fission biological_process
GO:0005777 peroxisome cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0042803 protein homodimerization activity molecular_function

KEGG:

id description
K17065 DNM1L; dynamin 1-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006571 True 3770 mRNA 0.47 20 9571489 9587506

Neighbor

gene id symbol gene type direction distance location
AMCG00006562 LOC105007066,LOC106576072,LOC106609221 coding downstream 374022 9195436 ~ 9197467 (-)
AMCG00006559 LOC102797044,LOC102787037 coding downstream 659486 8887691 ~ 8912003 (-)
AMCG00006554 NA coding downstream 701967 8858345 ~ 8869522 (-)
AMCG00006553 NA coding downstream 714815 8851743 ~ 8856674 (-)
AMCG00006550 foxp2 coding downstream 1058867 8477343 ~ 8512622 (-)
AMCG00006570 NA coding upstream 1425 9588931 ~ 9592122 (-)
AMCG00006573 NA coding upstream 18032 9605538 ~ 9606425 (-)
AMCG00006572 NA coding upstream 36579 9624085 ~ 9625892 (-)
AMCG00006580 NA coding upstream 481516 10069022 ~ 10084834 (-)
AMCG00006578 zcrb1 coding upstream 522955 10110461 ~ 10115803 (-)
G110594 NA non-coding downstream 93983 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 557163 9010140 ~ 9014326 (-)
G110369 psmc2 non-coding downstream 1662261 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 1814637 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 2003330 7567888 ~ 7568159 (-)
G110720 NA non-coding upstream 717425 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 834055 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 1015589 10603095 ~ 10603733 (-)
G110917 NA non-coding upstream 2084063 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 2201434 11788940 ~ 11789234 (-)
G110605 NA other downstream 11385 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 572225 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 777427 8783905 ~ 8794062 (-)
G110507 NA other downstream 847137 8722388 ~ 8724352 (-)
G110195 NA other downstream 2464351 7078389 ~ 7107138 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 499769 10087275 ~ 10107285 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 2430363 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 2461988 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 2483884 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 2549676 12137182 ~ 12140405 (-)

Expression


Co-expression Network