AMCG00006574


Basic Information

Item Value
gene id AMCG00006574
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9806029 ~ 9839864 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006574
GGTTCCGAACCCGGCCACGCctgccgccgaaccagaggttccaaagaaagtgaaaagaaaaaggtaactGCTCTAGTCCCGGCCACGCCCACTCCGGTCGTGCACGctgccgaaccagaggtcccgttCCAGATCCCGAACCCAGCCACCTCCgtcgaaccagaggtcccgaacCTGGCtgccgccgccgaaccagaggtcctgATCCAGGTCTCAAACACTGCCGCCGCCGCTGCCACACCAGAAATCCCGATCCAGGTTCTggtcccgatcccggccgcTGCTGCCCAGCCCGACTTTACGGTCCTCCCACGAGAGGATGGAAAGGAGTACGGGCCGGTATTTGAAGAGCAGCCGATCGATACAATCTACCCAGAGGAAGCCCCAGAGGATAAAATCACACTGAACTGTAGAGCACGGGCTAACCCACCGGCGACATACAAGTGGAAATATAATGACTGGGAAATCAGAATAACGGAGCCGGACGAACGCTACAGTATGGTGGGAGGTAACCTTATGGTTAAAAACCCCACTAAGCAAACCGACGCTGGGAAATACGTCTGCATAGCGAGAAACAAACTCGGCTCAGTGGTCAGCAAAGAGATCCAACTCAAGTTCGGGTATTTGGATCTATTCTCAACAGAGGAACGAGAGGCGGTACAAGTGAAAGAGGGACAGGGTGCCGTACTGCTATGTGCCCCTCCTCCACACTTCCCAGATGATCTGTCTTTCCGCTGGCTTCTAAACGAGTTTCCTGTTTTCATCCCTTTGGATAAGAGAAGGTTTGTCTCCCAGAGAAATGGCAATCTCTACATTTCAAAAGTGGACGCAACTGACAGCGGCAATTACTCCTGCTTCGTGTCCAGCCCATCCATTTCCAAAAGTGTCTTCAGCAAATTCATTCCTCTGGTTCCCCTCACAGAAGGTCCTGTAAGAAAGTATCCAGCAGATATAAAAGTGAGATTTCCAGACACTTACGCAATGGTTGGCCAAAATCTAACACTTGAATGCTTTGCACTTGGCAACCCTATTCCTGAAATCAGATGGAGGAAGATTGATGCTGAGCTGCCAAGCAATCACGAAATCACTATGGCTGGAGCTGTCCTTCAGATAATCAACGTTCAGATGGAGGATGAAGGGTACTATGAATGTGAGGCTTTAAATTCCAAAGGAAAAGATTATTACAGAGCTAAAGTCACTGTCCAGGCTTTCCCAGAGTGGGCAGAACATATCAATGACACGGAAAAGGACATCGGGAGTGAACTGTCTTGGTCATGTTTAGCACGGGGGAAACCTAGGCCTTACATCAGGTGGCTGAAAAATGGATATGCGtattCTAAGGGGACTGATCTTAAAATCTCTAGCCTTACCCTGGAGGACGCAGGGATGTATCAGTGTATAGCTGAAAACAGTTACGGAATTATCTATGCAAACGCTGAACTAAAAGTAATCGCTTGTGCCCCTAGTTTTGAATTAAACCCTGTAAAGAAAAGGCTGTTGGGTGCCAAAAATGGGCGAGTCGTCATCGAGTGCAAACCAAAGGCTGCCCCGAAGCCCAAGTTCTCCTGGAGTAAAGGCACAGAGCTGCTGACTAACTCATCAAGAATACGCATTTGGGATGATGGAAGTCTGGAAATTCTCAATGTCACAAAAATGGACGAAGGAAGGTATACCTGCTTTACAGAGAATGACAGAGGAAAGGCCAACAGCACAGGGACGCTCTTTATCACAGAGGCCACTAAGATAACACTGGCCCCATCGAACGCAGACGTAACCGTTGGAGAAGATGCTAAGATGCAGTGTCTCGCTTCCCGGGACTCCACCTTGGACCTCACCTTCATCTGGACTGTGGACAGCCACGTGATCGACTTCGATAAGGAGAGCGAACACTATCAGCGCAATCTTATTAAAGAATCAAGTGGGGAGCTGCTGATCAAAAATGTGCAGCTGAAGCACGCTGGGAGGTACACGTGCACGGCTCAAACGATAGTCGACAATGCGACAGCTTCTGCAGACCTGGTTGTGCGAGGACCACCAGGGCCTCCGGGGGGTGTGAGAGTGGAGGACATCAAAGATTCGTCAGTCAAACTCATCTGGAGCCGCGGCACTGACAACCACAGCCCCATCTCCCGATACACTGTCCAGTACAGGAACTTTCTGGAAGACAAATGGAAAGATGCTAAAACATcACCTTTGAACATCGAAGGGAATTCAGAGACGGCAAACGTGGTTGATTTAATTCCATGGACTGAGTATGAATTTCGTGTGATAGCGACAAATACTTTAGGGACAGGAGAACCCAGCGTTCCTTCTCCAAAAATCACAACTCTGGAGGCAGTTCCCAACGTCGCCCCATCTGATATTGGTGGGGGAGGAGGGACCAGCAGGGAGCTCACAATTACATGGACGccaGTGCCTAAAACATACCACTTTGGAAGAAATTATGGCTACATTGTTGCTTTCAAACCACATGGAGATAAGGAGTGGAGAAAGGTGACCGTAGCTGACCCAGAAGCAAGACGTTATGTGCACAAAGATTCATCAATTACCCCCTCCACCGAGTTCCAAGTCAAAGTGAAAGCTTTCAACAACAAGGGAGAGGGCCCCTACAGTCTGACAGCGGTGGTGTACTCTGCTCAGGATGCTCCTGTCGAGGCCCCCACGGGAGTCGTGTTCATAAACTTATCTGCCAGTGAAGCCATAGTGAAATGGCTGCCTGTGCTCCAGCAGTCAATAGAAGGTTATCAGGTAAAGTACTGGAGAAAGATATACGACAATGAAGCGGCTGCACAGCGGGTTCTTGTCTCCAGAAACGAGAATCAGACCAGGCTAGAAAACCTGCTCCCAGACTCGCATTACTACATTGAAGTCCGAGCCTTTAATTCGGCTGGCTACGGGCCACCCAGCGACATCTACGAGATCTACTCAAAGAAAGCGCCTCCCAGCCGTCCTCCaaggataattaaaaaatatattgttggtAAAAGGGTGAATATCGCCTGGGAACATGTCGTGCCTTTGGCCAATGAGTCACAAGTGGATGGCTACAAGGTATTGTACAGGCAGGAAGGAAAAGCTGATGGCCAGTTGTTCCAAACCGGCCTACATTACATCGAACTCCCTGTTCCTAAAGAAGGGGACTATGTGGTCGAGGTCCGTGCGCACAGTGAAGGAGGAGACGGTGCCGTGGCTCGAGTGAGAGTTTCAGGTGGAGCAGTGCGGTGTGTGCAGTCTGCCAGTTTCTTGGTCCTGGTCCTGTTGGCCATTTCTTGCCTGGGACTC

Function

GO: NA

KEGG:

id description
K06759 CNTN1; contactin 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006574 True 3282 mRNA 0.50 23 9806029 9839864

Neighbor

gene id symbol gene type direction distance location
AMCG00006575 NA coding upstream 54134 9721539 ~ 9751895 (+)
AMCG00006567 NA coding upstream 149413 9653307 ~ 9656616 (+)
AMCG00006569 NA coding upstream 163964 9632783 ~ 9642065 (+)
AMCG00006568 NA coding upstream 210906 9592392 ~ 9595123 (+)
AMCG00006564 NA coding upstream 245969 9530233 ~ 9560060 (+)
AMCG00006576 NA coding downstream 10786 9850650 ~ 9852328 (+)
AMCG00006577 NA coding downstream 128308 9968172 ~ 9984227 (+)
AMCG00006581 NA coding downstream 320129 10159993 ~ 10179843 (+)
AMCG00006590 NA coding downstream 672308 10512172 ~ 10518858 (+)
AMCG00006589 NA coding downstream 753433 10593297 ~ 10617772 (+)
G110590 NA non-coding upstream 349118 9456665 ~ 9456911 (+)
G110558 NA non-coding upstream 917537 8887686 ~ 8888492 (+)
G110523 NA non-coding upstream 1010698 8795060 ~ 8795331 (+)
G110447 NA non-coding upstream 1626341 8179441 ~ 8179688 (+)
G110446 NA non-coding upstream 1627301 8178521 ~ 8178728 (+)
G110681 NA non-coding downstream 190562 10030426 ~ 10031846 (+)
G110722 NA non-coding downstream 529851 10369715 ~ 10369931 (+)
G110849 NA non-coding downstream 1280526 11120390 ~ 11120735 (+)
G110883 NA non-coding downstream 1510020 11349884 ~ 11350117 (+)
G110916 NA non-coding downstream 1831705 11671569 ~ 11672448 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 237753 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 1081963 8710750 ~ 8724066 (+)
G110445 NA other upstream 1629243 8175760 ~ 8176786 (+)
G110279 NA other upstream 2150835 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 2893775 6911876 ~ 6912254 (+)
AMCG00006624 NA other downstream 2305881 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 2780198 12620062 ~ 12651815 (+)
G111197 NA other downstream 3171320 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 4093802 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 11097633 20937497 ~ 20944977 (+)

Expression


Co-expression Network