AMCG00006577


Basic Information

Item Value
gene id AMCG00006577
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9968172 ~ 9984227 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006577
GTCAACGGGAAGGATCTTTCTAAAGCAACACATGAGGAGGCAGTGGAAGCGTTTCGCAGCGCCAAGGAACCCATTGTAGTTCAAGTTTTAAGACGAACTCCTATCGCCAAGAATCATGGGAATTCTCAGGAAGTCCAGCTTGTGGATGTTTGCACACAGACGGACATTACTTTTGAACACATTATGGCTCTCTCCAAGTTAAGACCATCAACGCCACCCGTACCTGACATCTGTCCATTCTTGCTTTCTGACAGCTGCCACTCACTGCATCCAATGGAACACGAATATTATGAAGGAACTGAGTTTCTCTCCAGCCTGCCAGCTGACGCAGACAGGATGGATGAATTTGAGTATGAGGAGGTGGAGTTGTGTCGAAGAAACAGCCAGGAGAAGCTGGGCCTGACCCTCTGCTATCGGACAGATGATGAGGAGGACATTGGGATCTATGTCAGTGAgGTCGGTCCAAACACTATTGCTGCCAGAGACGGCCGTATCAGAGAAGGAGATCGAATTTTACAGATAAATGGCCGTGACGTGCAGAATCGCGAGGAGGCGGTGGCGTTGCTCTCGAGTGAAGACTGCAGAAATATCGTACTGCTGGTGGCCCGGCCTGAGATACAGCTGGATGAAGGATGGCTGGATGACGAGCATAATGAATTCTTGGAAGAGCTGAAGATGGAGATGTTGGAAGAGCAGCATAATGCAGTTATACAATACAAGACCAATGAAGTGGAGCAGCCAAAAAAGACTGAAGAAGACGAAGGCACGACAGACACGGCCACCACCTCCTCTAACACCCAGGAGAAGGACAGCGGGATGGGCAGGACGGATGACAGTGTACGCCACGACGAGAGCTCGGAGCAGGAGAACCTGGCAGACATCCAGAAACAAGcctctctccaggaccagcgAGAGATCGGCCACACCCAGGACACGCTGGGCAGCAACGACATCCCGTGCGACGAGAGCCTCGTGTCGGGCGAGTATGTGGACTCGGACGGCACCGGGGCGCCGGAGGAGGACTGCGACCGGTTCCGGCAGCTGCTGGAGCTAAAGTGCAAGATCCGCAACAGCGGCGAGTACGACCTCTACTACAGCCGCAGCAGCACCATTGAGTGCAGCATGAAGGAGCAGGATGGGGTGCAGAGGGAGCTGCGGCTGCTCAACGAGGAGCTCAGGAACATTGAACTCGAGTGCCAGAACATCATGCAGGCCCACAAGCTTCAGAAAGCCCGCAATAAGTACTCCGAGGTGTGGTCGGTGAAAGACGAAGGCTTCCGCAGTTACAACATCAGCGTGGACACGCCGAGCGGCAAGCTGGCCGACATCAACGAGCACCCGGAGAAGTCAGACAAGGACAGCTCCAGCGCCTACAACACCGCGGAGAGCTGCCGCAGCACCCCCCTGGCCATGGACCGCTCTCCCGATCACTCTCTCCAACGCATGGTCAGCATCACCAACAAGAAGAACCTGAAGAGCAGCATCACAGCCAGCCAGGTGATCTCGAGCCACAGCAGCCAAGGAGCCATTGTGGACAGAGACAGGACGTGTGACCAGGACAGCCCCAGTGAGTCACAGGAGATCGTCCCCTCTGATCAACAGAGGCCCAGTGTTCAGCAGATTCCCTATCTGTCCCCGTACCACAGCTCccagtacagacacacaaacatcccAGCCCATGCCAGGCATTACCAGAGCTACATGCAGCTCATCCAGCAGAAGTCGGCCGTAGAGTACGCCCAGAGCCAGCTCAGCCTCGTCAGCGTCTGCAAGGACCTGCAGAAGTCGGTGGAGCCCAAAATGGAGTGGAAGGTGAAGATCCGCAGCGACGGGACCCGGCCGGTCCGAGACAAGATCCTGAAGGAGCGTGCCTTAAAGATCAAGGAGGAGCGCAGCGGCATGACCACGGACGACGACACCATGAGTGAGATGAAGATGGGCAAGTACTGGAGCAAGGAGGAGCGGAAGCAGCACCTTGTCAGGGCCAAGGAGCAGCGGCGACGCCGGGAGTTCATGATGCGCAGCCGACTCGAGTGCCTCAAGGAGAGCCCCCAGAGCGGCAGCGAGGGCAAGAAGGAGATCAACATCATCGAACTGAGCCACAAAAAGATGATGAAAAAGAGGAACAAGAAAATATTGGACAACTGGATGACGATCCAGGAACTCATGACGCACGGGGCCAAGTCTCCAGAGGGGACGAAAGTGGACAATGCCTTCTTGTCTGTCACTACTGTATAA

Function

GO: NA

KEGG:

id description
K15682 PDZRN3_4, LNX3_4; ligand of Numb protein X 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006577 True 2238 mRNA 0.55 8 9968172 9984227

Neighbor

gene id symbol gene type direction distance location
AMCG00006576 NA coding upstream 115844 9850650 ~ 9852328 (+)
AMCG00006574 NA coding upstream 128308 9806029 ~ 9839864 (+)
AMCG00006575 NA coding upstream 216277 9721539 ~ 9751895 (+)
AMCG00006567 NA coding upstream 311556 9653307 ~ 9656616 (+)
AMCG00006569 NA coding upstream 326107 9632783 ~ 9642065 (+)
AMCG00006581 NA coding downstream 175766 10159993 ~ 10179843 (+)
AMCG00006590 NA coding downstream 527945 10512172 ~ 10518858 (+)
AMCG00006589 NA coding downstream 609070 10593297 ~ 10617772 (+)
AMCG00006596 NA coding downstream 776941 10761168 ~ 10763850 (+)
AMCG00006595 NA coding downstream 802033 10786260 ~ 10818604 (+)
G110590 NA non-coding upstream 511261 9456665 ~ 9456911 (+)
G110558 NA non-coding upstream 1079680 8887686 ~ 8888492 (+)
G110523 NA non-coding upstream 1172841 8795060 ~ 8795331 (+)
G110447 NA non-coding upstream 1788484 8179441 ~ 8179688 (+)
G110446 NA non-coding upstream 1789444 8178521 ~ 8178728 (+)
G110681 NA non-coding downstream 46199 10030426 ~ 10031846 (+)
G110722 NA non-coding downstream 385488 10369715 ~ 10369931 (+)
G110849 NA non-coding downstream 1136163 11120390 ~ 11120735 (+)
G110883 NA non-coding downstream 1365657 11349884 ~ 11350117 (+)
G110916 NA non-coding downstream 1687342 11671569 ~ 11672448 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 399896 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 1244106 8710750 ~ 8724066 (+)
G110445 NA other upstream 1791386 8175760 ~ 8176786 (+)
G110279 NA other upstream 2312978 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 3055918 6911876 ~ 6912254 (+)
AMCG00006624 NA other downstream 2161518 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 2635835 12620062 ~ 12651815 (+)
G111197 NA other downstream 3026957 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 3949439 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 10953270 20937497 ~ 20944977 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000123_00144776_00158373 NA coding CI01000123 null 144776 ~ 158874 (+)