AMCG00006578 (zcrb1)


Basic Information

Item Value
gene id AMCG00006578
gene name zcrb1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10110461 ~ 10115803 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006578
CTGTTGTATTTTGCAGAGCTGGGATATGTAAAGTAACAAACGCAGACGACAACATGAGCGGTGGTTTGGCACCAAGTAAAAGTACTGTTTATGTCTCCAACTTGCCATTCTCTCTGACTAATAACGACTTGCATAAGatttttacCAAGTATGGAAAAGTTGTCAAAGTGACTATAGTGAAAGACAAGGACACCAGGAAGAGCAAAGGCGTGGCTTTTGTACTTTTCCTTGACAAGGAATCTGCACAGAACTGTTCCAGAGCTCTCCATAATAAGCAATTGTTTGGCAGAACTGTGAAAGCCAGTATTGCTATTGACAATGGGCGAGCATCCGAATTCATCAGGAGGCGCAATTATACAGACAAGACAAGGTGCTATGAATGTGGTGACTCTGGTCACTTAAGTTATGCCTGCCCAAAAAATTTGCTTGGTGAAAGAGAACctccaaaaaagaaagaaaagaagaagaagaagaaatcagaAGAACCAGAAGAACAAGCAAAACTCGAGGAAGAGGAAGTTAGGCGCAAACAAAGTGCAGAGAGTGCAAACCAGGCTTCTACATCTGATGAGTCCAGACGTCCAAGGATTAAAAAGAGTGCATATTTTAGTGATGAAGAAGAGCTAAGTGACTGAGagctatacattttttattatataaagtgTCCAGCTCCtgaagaaattatttatttacagtttgttgacatttttatctgagaggattttttttaggtgtatgatttttgtttattctatttGAAGAATCTGTCGGAATATCTTTGTGGCAAATAATTAGAGTTGATAATTTATCAGCAGCTCTATCTCATCAGACAGGTTCCTTCCCTACAAGTTATTTCCACATACAATTTCTGCCTATGTAATCTatatacacagtttattttttgaaaaggtcacactttaattttaatctgtgctttttcttgaaatgtttattttatccaGTCAAATATCAAATGGAAGGATACCTATTACAAGTCAAATGTATCTTTCTCAGTTCAAAAGCGGTGGCGCATTAATAAACCATGCTTTATGCATTTGCTatgcaaaatgtacttttatctGTCGATCACTGTTTTTCCATAAAATAGTATAACTATTTTCCCCCGAATCTGATGctagaaaaaacattttcttgtgttttttttaaataaagtgctttgaaGGGAAAAGTAAAACTGAACCATAATCATCATCGTCGTCAGTATTGATTGATATGATATGCTCTCAGTGGAAAATATTTCTCACTGCTTTTAATGTGTAATGTTAGTGTAGAGGAGTGAGCAACCCTTGGGTACCAGATAAGAGGTTTGcgctgattgttttattttttattttgttctttctgaTTTTATATTACCTGCATTGCATCATTTATAACACCCAGTGATATATTAGATAacctgaattatttttaaaaagtaccttttttgaaattgaatgttTAGTGTTAAttgggtgtgtgttttttaagaatataatatTTCTAACTCTGGTTTACTGGTTGTTCAGTGCTCATTGATTGACTGGTGGTATAATCTACAGTTCCCTGTATGTGTCCATGTCCCTGTTCTATAAAATCTCAAGGTACAGGCTCATCTCTCAGTTGTCTTTTGGATCACCAATTGAATTATAGACCACTGTGCTCACTGTGCCGTGCAGAATTCAAGCGATTAAGGGCACCACAAAGGTGGTTCaaagctgttgttgttttctttcattgaaTGCTTGATGGTTAAGTATGCAATATTGATTTCCAGAATATAttaagagatgttttttttacactatGAATAACTAATGTTGTGATTGtgactttaaaaatgtctaaatgtaAATTACTGCAGCATAGTTCAGTCTTCATTTGTAGCATCAGATGAAgtgaaaaataactgaaatccAGGATcttcattaatgttttaatttgacataCCTGTGTTCTTATTGTGTTgattctttgttattttttactgcTAAGgttaatatgtattatactGAAAAACTATTCTTTAACATATGAGAGGGTTACTCCCAGATTATCTGCTTCTAAACCCATTTCAAACTGCTTTGGGATGGAATTTGGCAAATGCAACTCAAAACCTTTCGGATGCTTCCTTGGACTGCATGGAGCTGAATTGAAATAACCTTTACTGTACTGACTGAGTTTATGCTTCATGCTTCTATATACAATATGTGGGAGCATAAGAGGTTGGAAACTTAAAGATACAGTATGGAAATATTACATAGATTTTactgcatatatataatattaaatcagTTCAGAAGTatggaaagatgcatgcttggaataacaaggaaaacaaataaatggatctgagaacaaacaaaagtatgatGCATCATtggaagaatgaaaatgttaaaatggcaatgggccggacacacaagaagaacagaccaatgCAATAGCTATACAATTGATCCCGAGAGATGAAAAAAGAGCTagaaaacaaccaaataaaagaggggaagatgaaatcagaagctttgctggcatgacctggaaaagacatcaaaacaagtggaaacctcttggggaggccttcatgcagcagtggattgataaaggcGGTTGctgttaatatgtatatatgtactgtaaGAGAACAATAATAGATTTGCCATTTCACtgcaatttttaaaaaatgttttgtattaactgtacaTATATAGGGGGAGGGGGCATagcaaaatatgaaatggaGCTGTGAAGTATTACATTATCTCAAGCCAAACAGAGACCTATAATCCCCAAATCTCAGTTTTCATAAAGTTGGATGAAAGCACTACCCCTGTAATGTTTATTGCCACGCTATGGAAAGAATGCATTTGCCGTGACAGATTGGGTGATCCAGATGATCGATTTCCAGAACATTCACTCTGAATCTCTGCAAGGCCTCCAGCAGAGTCCCTACCTCCCGTTGACAAGCCAAACATCTAGGTTCTCCAGTTcggtgttcttttttttaacctgcaaGTACATGGAGACCATTTCCAAA

Function

symbol description
zcrb1 Predicted to enable RNA binding activity and zinc ion binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human ZCRB1 (zinc finger CCHC-type and RNA binding motif containing 1).

NR:

description
PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing protein 1

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13154 ZCRB1; U11/U12 small nuclear ribonucleoprotein 31 kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006578 True 3037 mRNA 0.36 6 10110461 10115803

Neighbor

gene id symbol gene type direction distance location
AMCG00006580 NA coding downstream 25627 10069022 ~ 10084834 (-)
AMCG00006572 NA coding downstream 484569 9624085 ~ 9625892 (-)
AMCG00006573 NA coding downstream 504036 9605538 ~ 9606425 (-)
AMCG00006570 NA coding downstream 518339 9588931 ~ 9592122 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding downstream 522955 9571489 ~ 9587506 (-)
AMCG00006582 NA coding upstream 66374 10182177 ~ 10198686 (-)
AMCG00006584 NA coding upstream 260131 10375934 ~ 10385675 (-)
AMCG00006583 adamts20 coding upstream 287771 10403574 ~ 10422520 (-)
AMCG00006585 NA coding upstream 328422 10444225 ~ 10467706 (-)
AMCG00006586 NA coding upstream 390248 10506051 ~ 10511361 (-)
G110594 NA non-coding downstream 632955 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 1096135 9010140 ~ 9014326 (-)
G110369 psmc2 non-coding downstream 2201233 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 2353609 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 2542302 7567888 ~ 7568159 (-)
G110720 NA non-coding upstream 189128 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 305758 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 487292 10603095 ~ 10603733 (-)
G110917 NA non-coding upstream 1555766 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 1673137 11788940 ~ 11789234 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 3176 10087275 ~ 10107285 (-)
G110605 NA other downstream 550357 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 1111197 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 1316399 8783905 ~ 8794062 (-)
G110507 NA other downstream 1386109 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 1902066 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 1933691 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 1955587 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 2021379 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 2760489 12876292 ~ 12878656 (-)

Expression


Co-expression Network