AMCG00006579 (yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625)


Basic Information

Item Value
gene id AMCG00006579
gene name yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10087275 ~ 10107285 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006579
acaGGAAACCTCGTCCAGTTTCCCAGTTGGTTGCACAGCAAGTAACCCAGCAGTTTGCTTCCCCAACACAaccaaagaaagagaaaaaagataaaacagaaaaagaaaaaaatgaaaaggaaaccaCACTCAAAAAGAACAGTCACAAGAAAATGAGGCCAAGATTAAAAAACGTGGACAGGAGCAGCGCCCAACACTTGGAAGTCACAGTAGGAGACCTGACTGTTATTATCACAGACTTTAAGGAGAAAGCAAAGTCAACACCAACTTCCAGCGCTACATCTGCCGACCAGCACAGTCAAAGCGGCTCTAGTTCCGACAACACTGAAAGAGGGATCTCCCGGTCGTCCTCGCCGCGGGGAGAAGGATCGTCAGTGAATGGAGAATCCCACTAAAACCTCGCGCCCCGGTCCCTGCCCCCAGCCCCCTGCTTCCCCGTCCCTGAGATTTATTTAGTctgttttgaacatgcaaatGTTGTAAAACCTACACCAAGATATACAAGTCCAGATTTCAGCCAGGATACACCACATTTTCATGGCATACAGACATGGTGGTTTACATTGTGGAAGCCTTCCAGAATGTTCTCGGCACTGATCGGTAGATTGTCCTCAAAGAGATGTGGAACATTGAGTGCACTTTTAAAGTAAATACTGTAATGTTACTTCACCCTTGCTGCTTATtcagtgaaaaatgaaaatctgtccCATGTTCCCAAAACGTACAGACTTTTCCAGGTCCATGTAAATGTGGTAGTATTTTACATCGAATCAGTGTTACATTGTCAATATACACttaatttcattcatttctttccctttccaCCGTGGACTCTATATTGTGGCATGAATTGGGTAAAAGTTTTAAGGAAGTATTTCAGATTTGCCGAATATGCATTACAGGAGAAAATGTGAAGCAGCTATCTGTAAGTGTACAGTGACATTGATCAATCAAATTAACTGTAATAGCAAGagcttttttttctcagtgGCTTAATGCACCTGCTGGTACTTGGTGTGGTATAATGGGAAattgttctttaaaaacagaaaagagaaaaaaaaaaaaaaaaactttaaaacacatttgtatacaGTTTTGCCAACGTTTTACAGCACATGTTATTCTAATAGATCATATCACTGTTATGTTGCTGGTTTTACCAAACTGTGCTGTTATATGTATATGAACATCTCagttaattacattgttttactgTCAGAACAAAAATTTATAAGTAAAAGAATGAAATGATGAATTAATTGTTTAGAGATTGATCTATCTTGATCTGCTtctcattcattttatattatagatGCTAGCTTGTCATTATTTACAGTGGTTTATATTATAGACatgatcacaaaataaaattaaaattatagactccTTAGTAAAATGCATCCTAAATATGGAGTTATTACGGTGtctactttattttttccatggtTGGTTAAAATTGGGAGTGAAGCACTAACAGATTTGGGAGGGTGGTCAAGGTCTTCATTATTCAGTGTGTTTACAAAGCAAAGCAAGTTGCTGCATTGATAGGAATGTATTAAATGCTGTCATGTTACTTTtgtgaaacaatttaaaaagacttgTGAGTACTGAATAGAAACTAATGATTTATATTCTAGTTTCAGTTTAATAATGATTCATTTGGATATTTAGGTATATTGCAATTTAAGTGACTGTTATTGAGGGCAATGATGAAatggaagatttatttttctcaaagcTGAAGAAAACTTTAAGGTATCATTAAcctgtatattattttcaagTAACATGACTTAAATTAACAAGTAGTGGTCAGCAGAGGTGGAGTGAAATAAATAGTGCTCAGACATTACTATTGCAAAcctaaaagaataaaataaaaaataaaaaacttattTCATAAGTATCTATTTAAatgaggaataaaataaatgataatggaatgtgattaaaaaataataaaaaagacaa
>TU138641
GGGTGGTGGGGCAGGGGGGGGGAGCAGCTGACCCAGACAGCTCCAAAACTGCACGCCCAGACTCAGTCACTGTGAGCAGGGGGAAGTGGCAGGCATGCATATCCAGTAAGGGCTCAGTTACAGGGAGGGTGCATCTGTGCATGGTGGACAGTGCATAATACaggaaggggaggaggaggaggggggacaCACAACAACAATGTCTGTCCCCTCCATCATATGCAAACCTGCCGCCTTCAGCTTCGTGTTTCTTTCAGGAAATCGCCTGCCGGCTGATTggccacccccccaccacgTGACCCTGCGACTGGAGTTTCCACGCCAGCTGGAAGCGCTGTGATCCGGGCGCCGCGGTCATCTCTACCCGCTCCTCCGTCCGCCGCTCCGTAGAAACAGACCCGCTCTGCGCACCATGGGAGACAAAAAGAGCCCGACCAGGTAACGCACGACCCCGACGCGTAAGAGACAGGGATGCGCCGGGGATGCGGTGGGTGTGAATAATTGAAGCGAGcgagcgagtgtgtgtgtgtgtgtgtgtgtctgtgagtgagtgagtgagtgagtgagtgtgtgtgtgtgtatgtatatgtgtgtgtgtgtgtgagtgagtgagtgaggtgGCCGCTAGTGTAGCAACCATGGCGGACGGGCTGTTTCATTGCAGCGTCGGCGCGGATATCTCGTCAGTCTGACCGCTCTCGGGTCACGGCGGGCTCCGGcacctttttgtgtgtgtgtgtgtgtctgggaagTGGGCCGAGCGGATGCCCCCCGTGTGCCGGCGTGGCGACagtacagggggaaaaaaaagtggtgttgtgtttttgttgtcgtttttgAAGGCCGAAGCGGCAGCCCAAGCCTTCCTCCGACGAGGGATACTGGGACTGCAGCGTGTGCACGTTCAGGAACAGCGCCGAGGCTTTCAAGTGCATGATGTGCGATGTCAGGAAGGGGACCTCGACACGGAAACCTCGTCCAGTTTCCCAGTTGGTTGCACAGCAAGTAACCCAGCAGTTTGCTTCCCCAACACAaccaaagaaagagaaaaaagataaaacagaaaaagaaaaaaatgaaaaggaaaccaCACTCAAAAAGAACAGTCACAAGAAAATGAGGCCAAGATTAAAAAACGTGGACAGGAGCAGCGCCCAACACTTGGAAGTCACAGTAGGAGACCTGACTGTTATTATCACAGACTTTAAGGAGAAAGCAAAGTCAACACCAACTTCCAGCGCTACATCTGCCGACCAGCACAGTCAAAGCGGCTCTAGTTCCGACAACACTGAAAGAGGGATCTCCCGGTCGTCCTCGCCGCGGGGAGAAGGATCGTCAGTGAATGGAGAATCCCACTAAAACCTCGCGCCCCGGTCCCTGCCCCCAGCCCCCTGCTTCCCCGTCCCTGAGATTTATTTAGTctgttttgaacatgcaaatGTTGTAAAACCTACACCAAGATATACAAGTCCAGATTTCAGCCAGGATACACCACATTTTCATGGCATACAGACATGGTGGTTTACATTGTGGAAGCCTTCCAGAATGTTCTCGGCACTGATCGGTAGATTGTCCTCAAAGAGATGTGGAACATTGAGTGCACTTTTAAAGTAAATACTGTAATGTTACTTCACCCTTGCTGCTTATtcagtgaaaaatgaaaatctgtccCATGTTCCCAAAACGTACAGACTTTTCCAGGTCCATGTAAATGTGGTAGTATTTTACATCGAATCAGTGTTACATTGTCAATATACACttaatttcattcatttctttccctttccaCCGTGGACTCTATATTGTGGCATGAATTGGGTAAAAGTTTTAAGGAAGTATTTCAGATTTGCCGAATATGCATTACAGGAGAAAATGTGAAGCAGCTATCTGTAAGTGTACAGTGACATTGATCAATCAAATTAACTGTAATAGCAAGagcttttttttctcagtgGCTTAATGCACCTGCTGGTACTTGGTGTGGTATAATGGGAAattgttctttaaaaacagaaaagagaaaaaaaaaaaaaaaaactttaaaacacatttgtatacaGTTTTGCCAACGTTTTACAGCACATGTTATTCTAATAGATCATATCACTGTTATGTTGCTGGTTTTACCAAACTGTGCTGTTATATGTATATGAACATCTCagttaattacattgttttactgTCAGAACAAAAATTTATAAGTAAAAGAATGAAATGATGAATTAATTGTTTAGAGATTGATCTATCTTGATCTGCTtctcattcattttatattatagatGCTAGCTTGTCATTATTTACAGTGGTTTATATTATAGACatgatcacaaaataaaattaaaattatagactccTTAGTAAAATGCATCCTAAATATGGAGTTATTACGGTGtctactttattttttccatggtTGGTTAAAATTGGGAGTGAAGCACTAACAGATTTGGGAGGGTGGTCAAGGTCTTCATTATTCAGTGTGTTTACAAAGCAAAGCAAGTTGCTGCATTGATAGGAATGTATTAAATGCTGTCATGTTACTTTtgtgaaacaatttaaaaagacttgTGAGTACTGAATAGAAACTAATGATTTATATTCTAGTTTCAGTTTAATAATGATTCATTTGGATATTTAGGTATATTGCAATTTAAGTGACTGTTATTGAGGGCAATGATGAAatggaagatttatttttctcaaagcTGAAGAAAACTTTAAGGTATCATTAAcctgtatattattttcaagTAACATGACTTAAATTAACAAGTAGTGGTCAGCAGAGGTGGAGTGAAATAAATAGTGCTCAGACATTACTATTGCAAAcctaaaagaataaaataaaaaataaaaaacttattTCATAAGTATCTATTTAAatgaggaataaaataaatgataatggaatgtgattaaaaaataataaaaaaga

Function

symbol description
yaf2 Predicted to enable DNA binding activity and transcription coregulator activity. Acts upstream of or within forebrain development and negative regulation of apoptotic process. Predicted to be active in nucleus. Is expressed in forebrain; head; and midbrain. Orthologous to human YAF2 (YY1 associated factor 2).

NR:

description
PREDICTED: YY1-associated factor 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006579 False 1974 mRNA 0.35 2 10087275 10089638
TU138641 True 2935 TUCP 0.43 3 10087278 10107285

Neighbor

gene id symbol gene type direction distance location
AMCG00006580 NA coding downstream 2441 10069022 ~ 10084834 (-)
AMCG00006572 NA coding downstream 461383 9624085 ~ 9625892 (-)
AMCG00006573 NA coding downstream 480850 9605538 ~ 9606425 (-)
AMCG00006570 NA coding downstream 495153 9588931 ~ 9592122 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding downstream 499769 9571489 ~ 9587506 (-)
AMCG00006578 zcrb1 coding upstream 3176 10110461 ~ 10115803 (-)
AMCG00006582 NA coding upstream 74892 10182177 ~ 10198686 (-)
AMCG00006584 NA coding upstream 268649 10375934 ~ 10385675 (-)
AMCG00006583 adamts20 coding upstream 296289 10403574 ~ 10422520 (-)
AMCG00006585 NA coding upstream 336940 10444225 ~ 10467706 (-)
G110594 NA non-coding downstream 609769 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 1072949 9010140 ~ 9014326 (-)
G110369 psmc2 non-coding downstream 2178047 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 2330423 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 2519116 7567888 ~ 7568159 (-)
G110720 NA non-coding upstream 197646 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 314276 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 495810 10603095 ~ 10603733 (-)
G110917 NA non-coding upstream 1564284 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 1681655 11788940 ~ 11789234 (-)
G110605 NA other downstream 527171 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 1088011 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 1293213 8783905 ~ 8794062 (-)
G110507 NA other downstream 1362923 8722388 ~ 8724352 (-)
G110195 NA other downstream 2980137 7078389 ~ 7107138 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 1910584 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 1942209 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 1964105 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 2029897 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 2769007 12876292 ~ 12878656 (-)

Expression


Co-expression Network