AMCG00006580


Basic Information

Item Value
gene id AMCG00006580
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10069022 ~ 10084834 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006580
CTTTTAACAAGTAGGAAGATGCAATATGCatgcatgaataataatacaaataccatCAACGAACACATTTCtgcacagattattttttaatatgtacacGTCCCCAACATAACTGTAGGagtaagaaacacacaaaccactGTTCAGAAATAGCTTTACATAACACCGTGACCTGAAGCCAGCTCTGCTGTGACTGAATGTCTGCTCCGGCTTCTTCCTCCCAGAAGTCTCTGCTGTGGCTTATTTGCTTGACAGCAGTGGAGGCGGAGGAGGTGTCGGTTCCCCGGTGTTGCAACACCTCCGCTCGGCGTCGTGAGCGCTTACGTCGGGCTGCTCATGGTGAAATAATCCCGTTTAGGTGTCTTTTCTTGCCGAGACGAGATGCGGCGGTACCTGCGTGTGCTGCTCGTCGGCACGGTGCTTGTTTTCTGCTCCGTGCTGTACGTGTTCAGCCAGCTCGCCTCCTCTCTGGAAGCCCGGGCCGGGGGACAGGGGAGGAAGGCGCCGCACGGAGCCGCTCTGCTGCAGGGGCGCGGCGGGCAGCGCGTCAGGAAAGGGGCGGGAAGCGCAGGCCCGGAGGACCCTCGGTGGGGCGACAGATACGCTGTGCGAGAGCCGGGCTCTGCGGGCGCTTCAAAGGGTCCCACCGAGCTGATGCACCTCGCTGTGGTGGCGTGTGGCCAGAGGCTGGAGGAGACGGTGACCATGCTGAAGTCTGCTGTCATCTTCAGCATCAAGCCCGTCCAGTTCCACATTTTCGCAGAGGACCAGCTACATGGCAGTTTTAAAGAAATCCTGGAATCCTGGCCCCGGCAGTTCCGCTTGAAGTTTAACTACACGATCTACTCCATCGCCTTCCCCAGCGAGAACGCCGCCGAGTGGAAGAAGCTGTTCAAGCCCTGCGCCTCCCAGAGACTCTTCCTGCCTATTATCCTGAAGGAAGTGGACTCCCTGCTGTACGTCGACACCGATATTTTGTTCCTGCAGCCGATGGATGAGATCTGGTCCTTCCTGTCCGAGTTCAACGCCACTCAGATGGCTGCCATGGCCGCAGAGCACGAGGAGCCTCGCATCGGCTGGTATAACCGCTTTGCCAGGCATCCTTTTTACGGCAGGACCGGAGTGAACTCGGGTGTCATGCTGATGAATATGACCAGGATTCGAGAGAAACATTTTAagAATGATATGACGACCGTCCTCCTTCAGTGGGAGGAGCTGCTGATGCCTTTGCTTCGGAAATACAAACTCAACATCACCTGGGGGGATCAGGatctattaaatataattttccacCACAATCCAGAGAGTCTCTTTGTGTTTCCCTGCCAATGGAACTACCGCCCCGATCACTGCATTTACGGCAGCAACTGTATCCCAGCTGAAGAGGAGGGCATCTTCATCCTTCATGGGAACCGCGGTGTTTATCACGATGAGAAGCAGCCCGCCTTCAGAGCCGTATATGAAGTCATTCGAAAATATGCATTTGAAGAGGACCCAGTAAACTCCATACTGAACCTGCTTGAAGAACGATTACTAAGGACAACACACACGTACTGTGGACGAGTGCAACACTTATTCACAAAGAAGCTACAGCACACTGTGAGGACTTTTCAAAACACGTTCCCGAGGGGAAGGTGATCTTTTAGGTTTATTTTCCAGGTACTTCCTACGTGGAATTTTCCCGTTAAGTGTAGGGCAGAATTCCTGAAGTTTGTGCCCACGACAGGTCAACAGTCTTAAGTGACGTGTCAGACTTTGCGGAGAAGAGTGGCTATGAAGACTCGGAAGTGGAAGAAAAACCTGCTGTGTTTTACTTGAAAAGCCGAGAAGTTCTTTAACCGAATGTCAGATTTTGATAGAAGCACTAATCTCACTTTGCTGTACAGAAACccttttgtttacatgaatgAGGTCTCGTGTTGTGACGGCAAGGAATGTCAGATTGAAACATTTGACGTTGGCtgtttcatgcttttaaatgtgactgaaatgttttgacAATCATTTAACTTTAGGTAATTTGGAAAAGATTACATAAGACATCGAGAGATGCAATGTTTTGCTCATTGTGGCAAACGAAGCCTTCTGTTACACTACAATAGAACTGCATCTTCCTTTGCTTTGAGGTATTATAATGAATGTCtctttttataatttaagtGCTGGCCAAGAGCAGGCCTTGTGAGCTACCATGGGAACCAAACCAACTGGTTTAAAATAAGAGAGAGCAGACTAAATTTATGAGAGTATTGTCAGAATTTGTTCAGTATGAAATGAATAATGGCTAAATGCAATTGTAGGTGTGTTATTGAATAATCACTTCAGATAATCACTCTGTTCTTTTGAAGAGTTCTGGTCCATTATGGACATTCATGTCTTTGTCAGCTATAACAGCTAGTGTGTAAACTAGCCTTAAGCAACTCCCTGCCCTTCCTGTAGAACAAAGTTAGAATTAAGTTATTGGAATAAAAGTTCCAATACTCGATCTTGTCAcgtagtttaaaaacaaatgtgtatattcaTAGTCCTTGTACTAAAcccattcaattatttaaatagtaaaaatagtaaaaactATTAAGGATGCACCAAAAATATGAGGTTATTAATGCTACAGACATAAAACGCAATGATTCCCATTTAGCAAGGCATTAAGTATTGATTTTAAGAGACTAAACTGGTTTCATGAGCCTGTCTCATCCATTTCAAaggatgacattttaaaaaccaaaaaaataaaaataaataaataccccaattatttttttaaacaaactgccTTAACATTTGCAGAAACCTTCTATGGATTGATCTGTATGCAAGTAGAGAGACCAGAGGTCCAGGTTTTGGAGCAGTAGTGAAGCTCAGTATGTAATTTTCTTCATCTCACACTGTAACCTGTGCTCCCCATGCTGTGAGCTAATATACAGCATCTTTCAGAATGTAACAGTTACCAAGAACGTGGTGTAATTTATGCCTGTCACAGGAGTCTTAATATTTAACCCgttttctttattgttattgtctttATTACTTTACAAAGTATGTTTAAAAGGGTCCAAGTCTCTTATGGTGTTCTGAATGCAGTACAAACTTATTCAATTTGCactaaatacaagtcaaagaaACCGTCTTAATGCATGTATATTAAagagattatttaaataattattttgagatCCATTCTCAATGATGAATTGTTCATTAGAGGGTGCTAGATTGCTCtggaattaataaaacaccactTAAGTCATTGCAATGCAACACAATTTAAGTGTAGTGGCAGACTGAGAAGGTGAATACTTGATTTAAAGAGCTGGGATGTTTGTGTATCTGTACAATAAATCTGGACATTTGGGGAAAGGGGAATATATATTGGTTATATGGATTGTTTTCTTGCTTCTTGTTTCTTGGATAGTACAgtttctgattttgtttcattaattgCTAATGCCAAAACGGAAAACATGTTGGTTGTTTGATCGGACCAGAATGTTTGTCAGTGATTTAGAATGTGCTTGAGGATCATAAATcacttattttaaatctaaCTGCGTAATAAACTGGAATATGGATGTAAAATCATAAGCAAATGGTTTAGGTTTTGATATGACCTTTTACCTcaatgtacacatttaattttatacttgTAAAAGTGACAATACTTTACATATGGaaactgcaatattatttttataataaacttTCAGAAATGTGGAGTCAA

Function

GO: NA

KEGG:

id description
K13676 GXYLT; UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006580 True 3724 mRNA 0.43 7 10069022 10084834

Neighbor

gene id symbol gene type direction distance location
AMCG00006572 NA coding downstream 443130 9624085 ~ 9625892 (-)
AMCG00006573 NA coding downstream 462597 9605538 ~ 9606425 (-)
AMCG00006570 NA coding downstream 476900 9588931 ~ 9592122 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding downstream 481516 9571489 ~ 9587506 (-)
AMCG00006562 LOC105007066,LOC106576072,LOC106609221 coding downstream 871555 9195436 ~ 9197467 (-)
AMCG00006578 zcrb1 coding upstream 25627 10110461 ~ 10115803 (-)
AMCG00006582 NA coding upstream 97343 10182177 ~ 10198686 (-)
AMCG00006584 NA coding upstream 291100 10375934 ~ 10385675 (-)
AMCG00006583 adamts20 coding upstream 318740 10403574 ~ 10422520 (-)
AMCG00006585 NA coding upstream 359391 10444225 ~ 10467706 (-)
G110594 NA non-coding downstream 591516 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 1054696 9010140 ~ 9014326 (-)
G110369 psmc2 non-coding downstream 2159794 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 2312170 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 2500863 7567888 ~ 7568159 (-)
G110720 NA non-coding upstream 220097 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 336727 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 518261 10603095 ~ 10603733 (-)
G110917 NA non-coding upstream 1586735 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 1704106 11788940 ~ 11789234 (-)
G110605 NA other downstream 508918 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 1069758 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 1274960 8783905 ~ 8794062 (-)
G110507 NA other downstream 1344670 8722388 ~ 8724352 (-)
G110195 NA other downstream 2961884 7078389 ~ 7107138 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 2441 10087275 ~ 10107285 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 1933035 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 1964660 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 1986556 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 2052348 12137182 ~ 12140405 (-)

Expression


Co-expression Network