AMCG00006581


Basic Information

Item Value
gene id AMCG00006581
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10159993 ~ 10179843 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006581
ATGGAGGACATTCAGAATTTGCAAGGGGAGCAGGAGGAGCCACAGATGAGCAAAGATGAAAGTGCAAAACTTCTGAGTGAAGACTTTCAGGAACGACGATCTCAGGCCATTGCAGCCAAAGCgagagaaattgaacagGTGTACAGGCAGGACTGCGAGACGTTCGGGATGGTCGTGAAGATGCTGGTGGCCAAGGAGCCGTCTCTGGAGAAGCAGCTTCAGAGCCCGTTGAAGGAGAACCTGACGGAGATCCGAGAGCGTTGCCTAGAAGACCTCAAACACTTCATCTCAGACCTGGACCAGGTGGTTCTGCAGCCGCAATGA

Function

GO: NA

KEGG:

id description
K21872 PPHLN1; periphilin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006581 True 324 mRNA 0.53 3 10159993 10179843

Neighbor

gene id symbol gene type direction distance location
AMCG00006577 NA coding upstream 175766 9968172 ~ 9984227 (+)
AMCG00006576 NA coding upstream 307665 9850650 ~ 9852328 (+)
AMCG00006574 NA coding upstream 320129 9806029 ~ 9839864 (+)
AMCG00006575 NA coding upstream 408098 9721539 ~ 9751895 (+)
AMCG00006567 NA coding upstream 503377 9653307 ~ 9656616 (+)
AMCG00006590 NA coding downstream 332329 10512172 ~ 10518858 (+)
AMCG00006589 NA coding downstream 413454 10593297 ~ 10617772 (+)
AMCG00006596 NA coding downstream 581325 10761168 ~ 10763850 (+)
AMCG00006595 NA coding downstream 606417 10786260 ~ 10818604 (+)
AMCG00006593 arid2,LOC106576411 coding downstream 648472 10828315 ~ 10829509 (+)
G110681 NA non-coding upstream 128147 10030426 ~ 10031846 (+)
G110590 NA non-coding upstream 703082 9456665 ~ 9456911 (+)
G110558 NA non-coding upstream 1271501 8887686 ~ 8888492 (+)
G110523 NA non-coding upstream 1364662 8795060 ~ 8795331 (+)
G110447 NA non-coding upstream 1980305 8179441 ~ 8179688 (+)
G110722 NA non-coding downstream 189872 10369715 ~ 10369931 (+)
G110849 NA non-coding downstream 940547 11120390 ~ 11120735 (+)
G110883 NA non-coding downstream 1170041 11349884 ~ 11350117 (+)
G110916 NA non-coding downstream 1491726 11671569 ~ 11672448 (+)
G110930 NA non-coding downstream 1613325 11793168 ~ 11793535 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 591717 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 1435927 8710750 ~ 8724066 (+)
G110445 NA other upstream 1983207 8175760 ~ 8176786 (+)
G110279 NA other upstream 2504799 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 3247739 6911876 ~ 6912254 (+)
AMCG00006624 NA other downstream 1965902 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 2440219 12620062 ~ 12651815 (+)
G111197 NA other downstream 2831341 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 3753823 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 10757654 20937497 ~ 20944977 (+)

Expression


Co-expression Network