AMCG00006583 (adamts20)


Basic Information

Item Value
gene id AMCG00006583
gene name adamts20
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10403574 ~ 10422520 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006583
CACTGTCGACACGGCAAATGTGTGAACAAAGAAATGGAGATGCGCCCAGTGCACGGGGAGTGGGGGCCGTGGGGGCCATACAGTGCCTGCTCCAGATCCTGTGGGGGGGGGATTAGAAGCGCAGCCAGAGACTGCAATAAACCTGAAAATGGTGGGAAGTTCTGTGTTGGGCGGAGAATGAAATTTCGATCCTGTAATACTGAGCCGTGTCCCAAAGGAAGGAAGGACTTCCGAGAGGATCAGTGCTCTCAGTTTGATGGcaaacattttaacatcaaCGGTCTACCTCCTACTGTCCGCTGGATTCCCAAGTATAGTGGTATTCTAATGAAGGATCGATGTAAGCTTTTCTGCAGAGTTTCTGGGACAACGGCTTACTATCAGCTGAAGGACCGTGTGGTTGATGGAACGCAGTGCGGACCAGAGACACATGACATCTGTGTACAGGGCCTCTGCAGGcAAGCCGGTTGTGACCATGTGCTGAATTCCAAGGCAAGACGAGATAAATGTGGAGTGTGTGGCGGTGATAACTCATCGTGCAAAACTTTAGCTGGTACCTTCAACAGTGCTCAGTATGGTTATAATGTTATCGTGCGAATACCTGCAGGGGCAACGAACATTGACATACGACAACACAGCTACTCTGGAAAACCAGAGGACGACAACTACCTCGCATTATCTGACAGCCAATccaatttcattttgaatgggAACTTTGTGGTGGCCATGTTTAAAAGGGAAATCGCTTTTCAGGGAACCACCATTGAGTACAGCGGCTCAGATACCAATGTGGAGCGCATTAACTGCACCGAGAGGATCGAGGATGAACTCGTTCTGCAGGTCTTATGCGTGGGAAATCTGTACAACCCAGATGTCCGGTACTCTTTTAACATCCCAATTGAGGAACGCAAGGAACAGTTTGTCTGGGATCCCTACGGCCCCTGGCAAGAATGCAGCAAAATGTGTCAAGGTGAGCGGAAGCAGAAGGCTGTCTGTGTGCGCAAGAGTGATCATCTTGTGGTGTCCGATCAGCGCTGTGAGCATCTGTCCCGGTTGAGTCTTGCCACAGAGCCCTGTAACACAGATTGCGAATTGAGaTGGCATGTGGCGGGAAAGAGTGAATGCTCAGCTAAGTGTGGCCCTGGCTACAGGACTCAGGATGTACATTGCATGAAATACAGCACACTGAAAGGCCAGAGCGATCGAGTTGAAAGCCGGTTCTGCAGTGACCAGTCCAAGCCTCAAGTCAGAGAGTCGTGCCACGGAGACTGCCATCTGAAGAGCTGGCACTACTCCGCCTGGTCAGAGTGCTCTAAGAGCTGTGGCAGAGGCACCAGGACCAGAGACTCGTACTGCATGAACAACCTGGGCCGGCGCCTCATTGACAGAGAGTGTAATGAATACCAGAGAGTGCTGTCTGAGAGCTGCAACGATATCTCTTGTCCAGATTGGGCTTCTAGTGAATGGAGTGAGTGCCTTGTGACATGTGGGAAGGGCACGAGACACCGTCAAGTCTGGTGTCGTCTGAACGAAGAACGATTGAGCGATCATTTCTGTAACCCGAACGCCAAGCCCCAAGCCGTGGGGGCCTGTGAACTGCCTGAGTGTGCCTCCTGGCAGGTCGGGGTCTGGGGGATGtgtgCTGTCAGCTGTGGACAGGGGTACCAGATGCGGGCTGTAAGGTGTGTAGCAGGaacctatggtgaaacattagATGACCGGGAGTGCAACGCGGCGGCCAGGCCAAGAGACAGCCAGGACTGTGAGATGCCTGCCTGTCCTGCATCCCCCCCTGTGTTCAGCACGGCCCACCCTGTGCCTCAGAGGGAGTTCATAACACAGTGGAGATATGGGTCCTGGACTCCGTGCTCCGTGTCCTGCGGGAAGGGGAAGAGGGCACGTTACGTCAGCTGCAGAGACGCACAGGGAGGCGTGGCGGACGAGTCGTACTGTGCCCATCTGCCCCGGCCCCCAGAGTCCTCCGCCTGCTTCAGCCCCTGTGGGCAGTGGCATGCTGGGGAGTGGTCACCTTGCTCTGTCACCTGTGGTCTTGGGAGAGCCACACGACAGGTTGTCTGCAGTAACTACCACCATCAGGTAGACGAAGGCTTCTGTGACCCGGACGATCGGCCCAGCACAGAGCAGGAGTGTACCACGGTGCCCTGTCCTTCGGTGTACCGTCTCCGGCCCAATAACCAGCCAAACACCCCCTTTGTAGACTACCAGAACCCCCACCTGGATTACAAACCGCCTAGCCATCCGGGCCACGATGACTGGAATGTGCCATCTGCGGACAACCAGTGGAGGACCGGGCCATGGGGAGCCTGCTCCAGTACCTGTGCGGGAGGGTTTCAGAGGCGCGTGGTGGTGTGCCAGGACGGAGAAGGACGCACTGCCAGCCACTGTGAGGAGAGAGTGAAGCCAGCCGAGTCCAGAAGCTGTGACTCGGGACCATGTCCTCGCTGGAACTACGGGATCTGGGGAGAGTGCACCCAGACGTGTGGTGGGGGGACAAGAACAAGGCTAGTCGTTTGTCAGCTGTCTAACGGCCAAAGATTAAATGACCACAACTGCGATGTTTTGGATAAGCCACCTGACATGGAACAATGTAACATACAGCCGTGTCCAGGTAGTGTTTCATGGCAACGAGGACCATGGAAGCCGGTACGATAG

Function

symbol description
adamts20 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within several processes, including negative regulation of apoptotic process; positive regulation of melanocyte differentiation; and proteolysis. Predicted to be located in extracellular space. Predicted to be active in extracellular matrix. Predicted to colocalize with collagen-containing extracellular matrix.

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 20

GO: NA

KEGG:

id description
K08624 ADAMTS9; a disintegrin and metalloproteinase with thrombospondin motifs 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006583 True 2673 mRNA 0.55 17 10403574 10422520

Neighbor

gene id symbol gene type direction distance location
AMCG00006584 NA coding downstream 17899 10375934 ~ 10385675 (-)
AMCG00006582 NA coding downstream 204888 10182177 ~ 10198686 (-)
AMCG00006578 zcrb1 coding downstream 287771 10110461 ~ 10115803 (-)
AMCG00006580 NA coding downstream 318740 10069022 ~ 10084834 (-)
AMCG00006572 NA coding downstream 777682 9624085 ~ 9625892 (-)
AMCG00006585 NA coding upstream 21705 10444225 ~ 10467706 (-)
AMCG00006586 NA coding upstream 83531 10506051 ~ 10511361 (-)
AMCG00006587 NA coding upstream 98792 10521312 ~ 10527300 (-)
AMCG00006588 NA coding upstream 128908 10551428 ~ 10551733 (-)
AMCG00006591 nell2,LOC105908795,LOC108428412 coding upstream 217138 10639658 ~ 10653405 (-)
G110720 NA non-coding downstream 98327 10304931 ~ 10305247 (-)
G110594 NA non-coding downstream 926068 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 1389248 9010140 ~ 9014326 (-)
G110369 psmc2 non-coding downstream 2494346 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 2646722 7756625 ~ 7756852 (-)
G110757 LOC103376870 non-coding upstream 180575 10603095 ~ 10603733 (-)
G110917 NA non-coding upstream 1249049 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 1366420 11788940 ~ 11789234 (-)
G110940 NA non-coding upstream 1367532 11790052 ~ 11793501 (-)
G110942 NA non-coding upstream 1372016 11794536 ~ 11796342 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 296289 10087275 ~ 10107285 (-)
G110605 NA other downstream 843470 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 1404310 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 1609512 8783905 ~ 8794062 (-)
G110507 NA other downstream 1679222 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 1595349 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 1626974 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 1648870 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 1714662 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 2453772 12876292 ~ 12878656 (-)

Expression


Co-expression Network