AMCG00006586


Basic Information

Item Value
gene id AMCG00006586
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10506051 ~ 10511361 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006586
TGTAAACCACGCTGTACGTGTCCAGCCTGAGCGGGATGCTAAGACCCAAAACACTCTCTGCGTACCAGTGTTTTGACGAAATGTACTAATGAATGGATAAAACACTTCTAAAGTAGGGTCTATATGAGCAGAACAGGCTTGAATAAGCAACAAAACAACTGCTCTCAAAATGGAGgatgaaagcaaagaaaactcCTGTACTTCTTCACTGTGCTGTATTAGCCATCACCCAGGTTTCAGGGGAAGCATAAAAAATTCAACAGCAGACTTTGTTGTGATAGAAATTAACTTGAATAATCAATGGGTAAATGTGGCACATTTATTGCCAAAGGTTTGCACCCAACAGTCTGAACACAGTGGACAGTGCCTGGGTGATAAATCAGAGGAGAAGACGGTGAAGCCTTTAAATAATATGCCAAACACAGGGGGGGAAATACAAATGGCACCTTACACTAGTGAGCCCTGTGACAGTGCGGACATGACTGTTGCCAGCGAGGAGTCTTTGGACCTGGACTTTATTTTGGACACTTCAGTAAATGAAGAGCTGATACAGTTTGCTATGATAACTAGATTGTGCGAAGACACAAGTGAAAAGTGTAGCAGTGCCGAACTATCGCTGGGCTCATACCCAGACAGAAACCAGAGAGCTAGTGTCCACCGCGCCGTCCGTCAGAGGTTCCCCTTCCTCATGACCATGACCAAAGGAAGTGAAATTCTAGTGAAGGAAGACCGCCATTATAAAGAGCTCTGCCGCCTGGTGTCCGAGGAAGAGTCCGAGGACTTCTTTAGGTTCTTAGATGCCAAAGTCCAAGATGCCACCTTCACATTTAAGCCAGATGATGATAAAGAGCACAGGAAAGCAGTCCATCATTTTGTCAGCAAACACTTTGGTAAGCTGGTGGAAACCAAGAGCTTCACTGCTGTGGACAGTGGTGGGCAACAAAAAGCCTCCATTACCGTGAGGTTTCGAGAAAGAAATAAGCCATCCAAGAAGAGGAAAGCTGCAGATACTCAGGAAGATGATGTTATATATACAGGTTTCACTCTACAAAAGGAAAACTTGGAAACATTAGAAGCAATAAGCTACTTGGCCAAAGCACTTGGTGTACTTCCCTCAGATTTCACTTACGCTGGAATCAAGGACAAGAGAGCCATCACATACCAGTCAATGGTGGTGAAGAAAGTCTCCCCAGAGAGGCTGAGGCAAATGAGCGcagagtttcagaagaaaggcATTCACATCCACCACATCCACCCCGTCTCACAGCCTCTGCGGCTCGGTCGGCTGAAGGGAAATCACTTTGACATCATTGTGAGGGATGTCAGGGCGCACTCCGGGGATTGCACCTCAGACCTGAAACAGCTGGTGCAGGAGGCACTGGACAATGTCAAGGCTAAAGGTTTTGTGAATTACTATGGGCCTCAGAGGTTTGGGACGGCACAGAGTGTTCAAGCAGACCAGATCGGACTGGCTCTGCTGAAGGAGGAGATGGTTATGGCTGTCAAGTTATTCTTCACACCAGAAGAAAGCAGTGACCCgcaaaataaagcaaagcaaCATTTCCTTCAGACGGAGGATGCGAAAGAGAGCCTGGCCCTCATGCCAGAGCACAAGGTCCGCGAGAGGCTGATGCTGCGGGCGCTGAACCGATACGGCGTGGGGCAGGAGGGCTGCACCCGAGGGTGGCTCAGCATCCCTCACAGCATGCGCGTCTTTTATGTCCACGCCTACTGCAGCCGGGTGTGGAACGAAGCGGTGGCCTTCAGACTGCGGCAGTTCGGCGACAGGGTGGTGAAGGGAGACCTGGTGTGGTCCGCCCTCGAAGACAAGGAAGGCAGTAAACCGAGTCTTTGTCAGGTTCATACCGTATCTGCTGAAGAAGAGGCAGAACACATTTACAAACTGCACCAGGTGGTCCTTCCAATGCCTGGCAACACCATAAAATATCCCGACAACAAAGTCGGCATCTGGTATCGAGAGCGGTTTGCCAAGGACGGGTTGCAGTCGTGTCGTTTCAGAGTCACGCCACTGAAGCTCAACATACCTGGATGCTATCGAGCGCTGTTGTCATACCCAAGAAAGGTAACTCACCACATACTGGAGGACTCTGTTGGAGCCATGAATGAGGAAACACCCGAGCAGGGCTCCCAGACATGCGGCCAGAGTCTCTCACCActcagtctgtctctgtcctttGACCTGGACCCCTCCTGCTACGCCACAGTGTATCTGAGGGAAATCATGAAATGTGATCCCTAAACCAGGAGAACACAGAACTGttgcaggatttattttgtgtatatgtttttctttatttcagagcattaatgttatttttcattaaactgtAGGACAGTGTTAATAGCCACCTGAAATGCCGTTTGTTCTCGGATCATTTATGTTCTGAAAATAAAGTCAgcattctatttttaatgtgtctTTGAAGGCTGGATTGaggttgttaaaaaaaaaaacatgaaaaccagAGTACAGCTTGGTTTCTCTTACCGAAACCTGATGAGTGTCTGTGGGGGTTGTGGTGCTGTTTTGTCCATTTATTTGTCAGCAGCTGCCAAACCTCAGTAAGACACACaaatcattatttgtaaaatggtTGTGTATATCTAAAGCAACTTTCAGGGATTACCAATtgccatgtatttttttattccagtgcATGCAG

Function

GO: NA

KEGG:

id description
K06176 truD, PUS7; tRNA pseudouridine13 synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006586 True 2684 mRNA 0.47 9 10506051 10511361

Neighbor

gene id symbol gene type direction distance location
AMCG00006585 NA coding downstream 38345 10444225 ~ 10467706 (-)
AMCG00006583 adamts20 coding downstream 83531 10403574 ~ 10422520 (-)
AMCG00006584 NA coding downstream 120376 10375934 ~ 10385675 (-)
AMCG00006582 NA coding downstream 307365 10182177 ~ 10198686 (-)
AMCG00006578 zcrb1 coding downstream 390248 10110461 ~ 10115803 (-)
AMCG00006587 NA coding upstream 9951 10521312 ~ 10527300 (-)
AMCG00006588 NA coding upstream 40067 10551428 ~ 10551733 (-)
AMCG00006591 nell2,LOC105908795,LOC108428412 coding upstream 128297 10639658 ~ 10653405 (-)
AMCG00006592 NA coding upstream 192712 10704073 ~ 10731630 (-)
AMCG00006597 NA coding upstream 250818 10762179 ~ 10816162 (-)
G110733 LOC103376870 non-coding downstream 35991 10421561 ~ 10470060 (-)
G110720 NA non-coding downstream 200804 10304931 ~ 10305247 (-)
G110594 NA non-coding downstream 1028545 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 1491725 9010140 ~ 9014326 (-)
G110369 psmc2 non-coding downstream 2596823 7907558 ~ 7909228 (-)
G110757 LOC103376870 non-coding upstream 91734 10603095 ~ 10603733 (-)
G110917 NA non-coding upstream 1160208 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 1277579 11788940 ~ 11789234 (-)
G110940 NA non-coding upstream 1278691 11790052 ~ 11793501 (-)
G110942 NA non-coding upstream 1283175 11794536 ~ 11796342 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 398766 10087275 ~ 10107285 (-)
G110605 NA other downstream 945947 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 1506787 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 1711989 8783905 ~ 8794062 (-)
G110507 NA other downstream 1781699 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 1506508 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 1538133 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 1560029 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 1625821 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 2364931 12876292 ~ 12878656 (-)

Expression


Co-expression Network