AMCG00006598


Basic Information

Item Value
gene id AMCG00006598
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10877715 ~ 10892122 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006598
ATGAGAAGCAACAAGCCAAAGACTTCAGATGGAACGGACAACGGAAACTCCCATCATTCCCAGTGCTTAAACATACACGTTTCCCCATCAGGTGAGAAGAGCCAGGAGGATGAGAACCAGGCTGTTGTTGTGGAGATCGATGAAGCAGACAGGTGTCCTATCTGTCTAAACCTCCTCCTCTGGCAGGAACTGGCTGTGCCTGAAAGCTGCTGTCATGTGTTTTGCCTGAGCTGTATTCTGAAGTGGGCTGAAACAGTCACATCCTGCCCTGTGGACCGAAAGCCTTTCCAAGCCATCTACAAACGGGATGCCACTCTGGGATGTATAAAGGTTAGTGCTAAGATTTGTGTGCGAGTCAGTAGGGGGACCTGTTCACAGCAACTTGTAAGAAGTGATTTCTCTTCCACTTCCTCATCGCGTGGCCAGCTCAGTGGATCATGTATCTCAATAACGGAAAGCTGTGCAGACTTCCTGGATGTGTATGAAGGGGAACCCCTGTTACAGCAGAAGCGCTGCCGACTCGAGACACACGAACGTCCCTGGCTGTCCGTCTCTGGCGCCATCCCTGTCGGAGGCCTGCTTCGGCAGCGCTTTGATCCCTGTGAAGTGCTTAACGATGTATTTCCTTTGAGATCACTATTACCAGACTCTACCTCTCCAGCAAATCCTCCTGCAGCCGGACATTTCATATTTCTTGGAAAGGAGTGTGCAGTCACTTGTTCcaagggagaagaaaaaaagagtgcTTCGAGGACATCCAGCACAAAAGGGTCAAAGAAAAAAACGGAGACTTCAGCTACAAGGAGGAGATCGACCCGGAACAGCCGCACGGATGATTCGCCTCCAGTACAGGATCCAAGTTCCCCACAGTCCAACCACTCGGATTCAGACTCCTCGGTCACAAACACGTCTACGAGGGCGGGCGGTACCTCCAAAAAGCCTGAGCGGCAGACGGCCAAGAGGAAGCCGAAGCAGCCAACTAAAGAAAAACGATTAGTGAAAAGAAAAACCAGAACAACCAGAAATGCCTCCAAGAAACCGGCCAGTAGCCCAGAAGAAAGTGATGCTGAACATCATGATGaggaagatgaggaggaggaggaagagaaagaagctGCCGAAGGTTCAGAGTCACTACTTTCCGATGGTGAACAAAATCCAAACGCACAAACGGGCGACTCCAGCCAACACTCAAATCAGGAAGACAACGGCACCGGAACCTCTGGGCAGAATTCTGAACACGAAGACTGCGATGCTGAAACCTCTGCGGAGATGAGCgtgaatgacaaaaacaaagacagcagCCCTGAAGAGGAGGAGTCCAGTTCCCAAAACCACAACCTTCCACTCTCatctgaggaggaggaggaagaggaaaagcAGGACGACGAGCCGGAGAGCAAACTCACCAACGAAACTCCTCTGGCATCAGATGAAGAGGTCTCCAAAGACCCGCCGCGGTCCCCCAGCAGCGAGGAAGCCTATGTCCCTGAAGACGAAAACGACTGCAGGTCTCCCGAAGAGAGAGCCTTTTCACATGGCGGCGATTCTCCTTCCTCTCCCCCCGACATAGAAGAGGCAGAGAGGGCTGAAAGTCCCTCGGAAAAAGAGGATTCCATGTCCCCGAACAGCAACCGACCCTACTCCCCTGTAGACATTGATATGGATGCGGACAAAATGGCTGTAGACGAAAACATGGAGCGCACAGAGAGAGCCTCAGAAAAACAGCCATCACCCCTGCCAGACAAGCCAATGAGCGAGGTGGACAAAGAACCGGACACGTGTTCAAATGATATTGAGGGGTCTCCTCGTTCTGATGGAGAGGATTCTGTACAAGCCGATCAGCCAAATGAAGCCGTTTCCAAGGAACCTCAAGTGGAAATGGACGATGGAGAGAAATCATTAGAGGAAAGTGAATCTCTCCATGTGAAGCCCATGGTTGCGGAGTCTGTAGACAGTGAAGAAAACAATGGGGAAGCTTTCTCTGAAGATAATAATGAAATGGTTCCAATGGAATGTGACTCCCCTGGTAGTGAACAACCTGAGACTAAAAACgatcaggaaaagaaaagagataATGCTGTCTCTGAAACTGTGCCTCCTGTGACTGAAAGCCAGGCATCCGAAGAGgataaaaaaactgaactgaaatccCAAGAAGAAACGTCGGAGAGTTCCAcggaacagaaaaaaacagagaagaagGAGGGAAGGCAGCGCAAATCCCGATTCCACTCTCCTTCTACAACCTGGTCCCCGAAGAGAGAGTCCagaaaggagaggaggagatCGAGGTCTAGGTCAAGGGAGCGTGACGCAACCCCACCGTCCAGACGCAGGTCTAGAACACGCAGCAGAGACCGGGACAGCGACCGAGATGGGCAGAAAAGTGACAGTCACAGAAGAGACCgcagcagggagagagagagaagaggcaGAAGGCGATCTAGAAGTAGGTCTCGATCCAGAACATACGCTAGAGGTTCCTCCCCGGAGAGGCCCGATAGGTCTGAGCGGCCCGAGAGGACCGACAGGGCTCACTCCCCGTGGAGAAGGGACAGATGGTCCAACGACAACTGGAGGAATTCCAGGGGAAGCGACCGGCCGAGAAGAAATGATCAGGAAAAACAAGGCGATTGCTTTGGTAAAGAATCTTCTGAACCCGACAACGAGGGCTTTCCAGAGATCCCACCAGAAAGAGGCCGGACAGAAAATCCCGACTGGGTGAAAGAACAAGTGAAAACCGATGACTCCGGAGTCCTGAATGAGTCGAGATGGGacgaaaacaagaaagaaagtaCAGGAGATTCCTGGACCCGGAATTTCAGCCCAGGGGGTTGGAAATCTGATCGTGGGCGCGGTGGGACGCGTGGGCGCGGCAGCACCAGCAGCGGCTTCAGGGGTGGCTTCGGACAGGGGGAGCCAGCCGAAAACCGCTGGCAACAGAGGAATTCTTTCTCAGGGATATCTAACAATTCAGGGAATGACTCTTACAGTAGGTTCAATGAAAACCGCACGAACAGACGGAAAGGCGAGCAGGACTTCGTGTCCGAGCCTCCCGTGGATCGCTCCGGCTGGTCCTCGGCCTCCAGCTGGGCCGTGCGCCGCACTCTGCCCGCAGACGTGCAGAATTACTACTCCAGGAGGGGGAGGAACTCTGCAGGGCCGACAGGGGGATGGATGAGACCGGATGAGGAGACACCTGGGCAAGATGCGAACGCCAGCGAACCCAACTCTCAGCCCAGCGACGGCCAGCAGCTGCCTGTCAATGTGATGCACCACCCACTGAATGTAATCCCCGCGCCCATCAGTGCGCCGCCCCTCAACACGCCGCCCGTGAACATCCTGCAGTTCCCCCTGGGGGTCCCCACCCCGGCCATGAACATGCAGTCTGCCCCGTTCAACATGTCCCATCAGCTGCCAGTGCACCTCCACTCCACCGTGCCGCTCCTGCAGGTGCCGGCTCCTGCCTCTCAGGGTCTCCCCCCTCCGCCACCACCGCCACCACCCTCCCAGCAGGCCAACTTCCTCGCCGCGCAGAACGACGGCAAACCACCTCAGGCAATGACCAGTGCCCAAGGGAGTAACAAGTTCAGTGCCCCTCTCCTGCCCACCCCAACAAAAGCCCCAGCAAGCTCAGTTCAGGGACCACCTAGCGGCATCCTTCCTTCCTCCACAACCCAGAGCAGTACGTCTGGAAGAGCCATTATGAGTAAAGAATCCATCAGAGTGGAAGCTAATGCTGACagttcaaagaaagaaaagAAGCAGCAGATCCAGGAAAAGGCTATACAAGAGGTAAAGCTGGCCATCAAACCCTATTACCAAAACAAGGACATTACCAAGGATGAATACAAGGAGATTGTACGCAAAGCAGTTGATAAAgtTTGCCACAGCAAAAGCGGAGAAGTGAATTCTGGGAAAGTGGCAAATCTAGTCAAGGCCTACGTCGACAAATACAAACACGCCCGCAAGAATAAGAGCGACGACCACGGGAAATTCTGAGGCGCTTCTCCGGAACCTTTGCTAAGTGCAATTTCTACCAGCTGTAACATTATCTAAACTTTTAGGGAGAACAGACTGGAAATCAGGTTTTGATATCGTCaacattaatgttaatgttaataataataataaaaaaataaaaaaagtaataatggagaaaaaaaaagttttctaaaagacttcatattttgtttaaaaataagagcAATGGAAATTCTAGTTGTAAaccctttgttttaaattggtcTGATGGATTGGGAACTACGGTTATTTGCTGACTTTAAGTGTTTAAGCTTAACATGGTGACGCTGGGCCagtggagtgtgtgtgggtCGGACGTGTACAGATCGAGTACCGGCAGTAGGGAGATCGAACCCGTTTATCTCCCGCAGCTCGATGGTACCGGACAGGCATGTACAGTTTTCATCAGATAAGTCTTTTCTTAAATCTCTAGGTTcaatttttgtctttttttaatctctttaaaGCCTAGGTAAATGTGTGTTGCCTTCATGATAATTtgtagtaaaaacaaaaaacgcaaaaaacaataagaaacaaCTGGAAAGCAGAGTGCAGGACTTCACCATGTATTTTATCATGTCAGAGAGCAGTATCTTGTAAGGGTTTAATATATCCCGATTAGGTTAGGCATTTCAGGGTAGTTAgcgaggggaaaaaaaagtttgctgATCAGAAATCCATGCCCTTtaatttttgtaaaatgtgctgCGTGGACACTGTACCTATAATCCAGAAAGCAATGAAATAAATGATATGCTGCTTATTGTGACTTTCATGCGTATTGTTTATAGGAGCTCTGACTAGACGAAAACCAGCAGATGCgatttcagtgttatttttttacggCTAGTTCCCTCGATTGTTGGCTTTTCGGTTCACAATGTAGATCACActgaattagtttttttttatcaatctATATTTGTATGCGTTTTTTAGTTTGTTGAACAATGAAGTGTAtttatgtgatttttgtttggggggggaaACGACTTCTGTGACCGTGAAAATCTTGTTCAGactctttattttcctttccctgCAGATTACGAACCTTAAAGTTCCCTAGAATGAGTGCCGATCCGTGTGTATTGCAAACCCCCGCCTTACCATCATTTCTGACCCGCTATTCATTGTAgtcacctgtgtgtgtttctctgtcatTGCAAACAAGCTCTTTAATGCTGTTTTTGATTTACACAAGATCTTTCCATGGCTTTCATTTCAATACGGCCGCACCACATTGATGTTGACCTAATTTGGCGATTTACTTTTCCTTGAAATGTCAAATTATTAAAGGTTGGTAAGAGCGTACTGTTTGTGGGAAGGGGTAGGGTGTCAGAAACAGGCAGTAGAGTAATCAGGTGCTTTAGAGGAATgtgactgtaaaatgtatatatagaaatCGGATGGAGAGAAAACATgcgtaataaaaacaaaaacaaaaatggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006598 True 5481 mRNA 0.49 11 10877715 10892122

Neighbor

gene id symbol gene type direction distance location
AMCG00006597 NA coding downstream 61553 10762179 ~ 10816162 (-)
AMCG00006592 NA coding downstream 146085 10704073 ~ 10731630 (-)
AMCG00006591 nell2,LOC105908795,LOC108428412 coding downstream 224310 10639658 ~ 10653405 (-)
AMCG00006588 NA coding downstream 325982 10551428 ~ 10551733 (-)
AMCG00006587 NA coding downstream 350415 10521312 ~ 10527300 (-)
AMCG00006599 NA coding upstream 15575 10907697 ~ 10917640 (-)
AMCG00006600 NA coding upstream 43275 10935397 ~ 10944809 (-)
AMCG00006603 NA coding upstream 102516 10994638 ~ 11015369 (-)
AMCG00006605 NA coding upstream 159930 11052052 ~ 11052897 (-)
AMCG00006604 NA coding upstream 209963 11102085 ~ 11117866 (-)
G110757 LOC103376870 non-coding downstream 273982 10603095 ~ 10603733 (-)
G110733 LOC103376870 non-coding downstream 407655 10421561 ~ 10470060 (-)
G110720 NA non-coding downstream 572468 10304931 ~ 10305247 (-)
G110594 NA non-coding downstream 1400209 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 1863389 9010140 ~ 9014326 (-)
G110917 NA non-coding upstream 779447 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 896818 11788940 ~ 11789234 (-)
G110940 NA non-coding upstream 897930 11790052 ~ 11793501 (-)
G110942 NA non-coding upstream 902414 11794536 ~ 11796342 (-)
G110957 NA non-coding upstream 1007841 11899963 ~ 11902168 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 770430 10087275 ~ 10107285 (-)
G110605 NA other downstream 1317611 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 1878451 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 2083653 8783905 ~ 8794062 (-)
G110507 NA other downstream 2153363 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 1125747 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 1157372 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 1179268 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 1245060 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 1984170 12876292 ~ 12878656 (-)

Expression


Co-expression Network