AMCG00006600


Basic Information

Item Value
gene id AMCG00006600
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10935397 ~ 10944809 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006600
ATGTCCATGTTGCCGGGTGAAGACGGGTGGGGGTGGAGCACCCAGGCGCTTTCAACAGTTGCTCGCATTGCACAGCCTCTGCACATTTATGCGCATCTGTTATACATGCTGCAGTGCCCCCCAGTAGCGGCGGCGGGGCGAGCCCAGCACCGGCCAGCACGTGCCTTTGTTTCCCTGCGGCCCCCCCGCCGCGCGCCGGGCTCGCGCTCCGCCGCGGAGGACGCGCAGTACAGCGCAGTACAGCACAGGCAAGGACAAAGCCAGCGCAGCCCGCAGCCCAGCCCGCAAGACCCCTTTGGATTGGGTTTGATTTCTAAGATGAAGCAAGGCACGGCAAAGACAGAGATGAGCCGCTTTAATATCTCCCCGGACGAGGACAGTAGCTGCAGCTCCAACAGCAACGAATACGGCTACCCAGAATGTCCCACTAAAAAGGTCCCTATTACCAGAGAATTGACACCGAATATGTTGGCATATGATGGGGGGGGGCGACGACACGCAATGTCAAGCTATCTCtacattgtgaaatatgagCTACCTATTGTAATCCAGGCATTTCTGGGTATTAAGGAGAACACTGGGCTGGACATGTTGTCATGTGAAGgTTATCTTGGGTACACCAGTGGCTTTTCCCTGCTTTGCATGGTCTTCTTTGTGATTGTGGTTATTTATAAGAAGTTCCAGATTCCCTGCCCCATGACGCTTGAGAAGGATGCAGTGAACATGACTCTAAACCACACACTGGTTCACTTATCTGAAATCCATGAGAGGATGAAGAATGTGACTCCTTATGATGAAGATGTGTGCACGCCAAAATATTTCGTTTTCAACTCCCAGGCAACAATCTTCTTGGTCAGCGGATTCATTGTTATGATCGGCTGCATGACGTTGATCATTCTGGACTGGACCCAAAGCCCTGCTGCTGTGCCCGACGGTCACTAAACACCAGAGAACAaaccgagagagagagcttgagccaCATCTTAGGGCGCACACCGATTCCTCAGACCTTGCATAGCCGAGAACCGGATTTCCGTAAGCAAAACGGATCTGATTGTAAAGACTGCATTGCAAAAACGCGTAAACATTTGCTCACCAACAAACAATGAGCGGTGATTTATATACCATTCCGAGAGAATGTATTAAACTTTGTACAGTACGCTATTAGGCCACATGGATGGCATTTAAAACCTGTTCTTGTtgcaattgtaattttttttttttaatgtgtgtttttttttttttagttcacgGTACAGTATAGATTTTGATTGTGCCTCAAACAGGGACTTACAAGTAATCCAGTAAAATGCAGCCAAGACATTCAAGTTCAGGTACTAAAAGTGAATTTTGCATGGATTTAATGGACCATGTTTGAGCACTactgaaattaatattgaaGCCTGGTCTATGAGTCCAATTTCACCTGGACAGCTACTGGGTTTCAAAGAAGACACTGAAAGACTATTAGTACGTAGACTTTAACCAAAAGTCCGTTCACATCTCATTTTACTATGCCAAAACTCTAAAGTAATacttggtttgttttcagaagcATTCATGTTCACTACACTACTATTAACCTTGTCTGTTATTTGACTTAAGTATAAGACATTTTAAGTGTTTACTCCAAAGTCCTTTGACCTAGTCTATGGAAATCTTGTCTGCATTAGTAAAAccaaaagctttaaaatgaataattccCTGAAACCTGCCTGCAAGATCCATGACCTACACCCTTAAACCAAACTTCAGACAGTATAAACGTACTTACTGGAACAGTCCACCTTGTCTGCTGTTCTCACAAAGCATGTTTGTCATTACAGATGTGCTGGTGATGCCTAAAATACAGCTTTAATAGCAGGCCAATTAATCCTACTATGTATAAAGGGGtgcaataatttaaatacattttaccatCCTGgtacagttttttgttttgttttaaagccacCTGCTTTTGTGTCATTTGCAGTATGTAAAATGCTTTGAATGAAAGACTGCACATAagtagtaatataataataataagcagctACGTAGAATGGCTTCCTGGTACTCAAGAAGAGCCAGTTCATGCAATGTGGCCATTAACCGCTTTAGGTTGCCGTAGCAATCTCTGGTCggattgtgattttatttcccccctcatCTGTTCAGTTTTTACAACCTTGTCAAAAATGTGATGTTTCTGGATTGATGGcagctttatttttaacattgtaagACTTGTATAATGTGTATGGCTTCCTCAATCTGAGTTCATCCCTACCGAGTTCCCTCTGTGATGCGATCACGTCTGCCGTTATGTCGTCTCCTCGTTTTAAGAGTGATCTCACTGTGCTTCCGATGCAAATTTCACAAGTCGTCAGTGGTGTTATTGTCCTGCGATATTTATGGAACAgcattaaatcaatgtaatttaatctattttactatatttataaaaatgtacatatgtatatactggTTGAACTGTGTATAtaagcattgttttctttttaattattttaactttttgcaAGTTGTTGAATACTGTAGAGCTGTCAAAGGCTGGTACATTGTTGCATTACCTGCCTGTTGAGTTCTCCCACACGTGGACCAGCtagctttcattttcatttaacagTAGTGGACGTTGTCCCTCAGACCACTAATTGTACTTTTGCaaactatacatatattttaagtagAAAGCACCAAAACTGAAACCTATAATGTATctgaagtttatttattttttaatttgtgtcctcctttcacagagcacacacatGACAGTATTGTATTTTCGTGAACCTATACCAGGtccaattgaaataaaaatgtcacttcAGAGTTATGATGCTGATGATCACTGTAACATTCATTATCctgaaattaatgtaatcttaggtcttatatatatatatataagacctAATTACACTTGATAGAATTACTGCagataaactgtgtaaatgaaGTCTTTATTTGCTAGTTTACAAATGGTTTGTCCTGCATACATGGTTTTTCTGTATTACATCGTGTATGCCATATTCAGTACTGTTGGAGAGCAAGTTATCTAGATGATTACCCAGGCAACGAGAGAGCATTACTATCAGTGCTACCCTCTTGTTTCAATGAAACATTATGTATATCCTGTAATTATGATGAAATAAAAGTTATAGATACCTAAAaacctttgtttttttggggtggggttATGATTTTGCATTTTACAGTGTTGGGCATAAATTCACTGCTGCAGAGAAGGCTAATGTATTATTGTCGATTCCTGGGCAATAATTggatacttttatttttaaggggATTGTTATCTTAAGACATAACAAGATGATACATTGTGTTTTGACTGGAAGAAAATAAGCAATCCCCATATCTACCACATGGCCTTGTCCATTGGAGCATACAAGCTAATGCTTTGAGAGACTGAAACCTAAACtatgatttaatacaaaatgccaGCAGGCTAGTAAAGTGACCATTGGGGCCTCAACCCACACACCAGCCAGGCACGTGCAGGGTGGGtgccaaaaaaacaatgcacacttGTTTAGTGCTAAATACTAGTAGGATGATTCAATATTGATTTGAGGGTGAAAACCAGGTTTCTAATCAAATATTACTaaagcatgtgtttttttttttttttatagataatGTAATGTATCAT

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006600 True 3676 mRNA 0.40 8 10935397 10944809

Neighbor

gene id symbol gene type direction distance location
AMCG00006599 NA coding downstream 17757 10907697 ~ 10917640 (-)
AMCG00006598 NA coding downstream 43275 10877715 ~ 10892122 (-)
AMCG00006597 NA coding downstream 119235 10762179 ~ 10816162 (-)
AMCG00006592 NA coding downstream 203767 10704073 ~ 10731630 (-)
AMCG00006591 nell2,LOC105908795,LOC108428412 coding downstream 281992 10639658 ~ 10653405 (-)
AMCG00006603 NA coding upstream 49829 10994638 ~ 11015369 (-)
AMCG00006605 NA coding upstream 107243 11052052 ~ 11052897 (-)
AMCG00006604 NA coding upstream 157276 11102085 ~ 11117866 (-)
AMCG00006602 NA coding upstream 269038 11213847 ~ 11231189 (-)
AMCG00006607 fam19a2,LOC103364248,LOC108248567,LOC103023565 coding upstream 605505 11550314 ~ 11551561 (-)
G110757 LOC103376870 non-coding downstream 331664 10603095 ~ 10603733 (-)
G110733 LOC103376870 non-coding downstream 465337 10421561 ~ 10470060 (-)
G110720 NA non-coding downstream 630150 10304931 ~ 10305247 (-)
G110594 NA non-coding downstream 1457891 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 1921071 9010140 ~ 9014326 (-)
G110917 NA non-coding upstream 726760 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 844131 11788940 ~ 11789234 (-)
G110940 NA non-coding upstream 845243 11790052 ~ 11793501 (-)
G110942 NA non-coding upstream 849727 11794536 ~ 11796342 (-)
G110957 NA non-coding upstream 955154 11899963 ~ 11902168 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 828112 10087275 ~ 10107285 (-)
G110605 NA other downstream 1375293 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 1936133 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 2141335 8783905 ~ 8794062 (-)
G110507 NA other downstream 2211045 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 1073060 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 1104685 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 1126581 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 1192373 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 1931483 12876292 ~ 12878656 (-)

Expression


Co-expression Network