AMCG00006601 (atp23,LOC106609469,LOC106576246)


Basic Information

Item Value
gene id AMCG00006601
gene name atp23,LOC106609469,LOC106576246
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11116560 ~ 11119469 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006601
CTTCAGAATGCCCTTTTGCTGGGGAACGATTCTGAAAGGTTGAGTGAAGTGCATGACGAGAAGGATTGCGAATCATTTGACACTTCCCCCCTGTAAtggatcaaaacaaacaaaatgaagacgACTACGGCTATCAGTTGTTCCCAGAGAGAAATACATCGAAATATAAAAAGGGGTCTATCGCAGAAAGCCTGTTTACCTTCAAGCACAAGTGTCAGGTCATGCTTCAGTTTACACTGGACACAAGTCCCTATGCAAAACTGCTTCTTGGTGCAATGAAACATTCCGGCTCTGTTTATACAGATCGGCATTTCTCCTGTGAGGATTGTGATGGAAAAGTTAGCGGTGGTTTCGATGCCACAACCTCACAAATTGTTTTGTGCCAGAATAATATTCACCAGCAGTCCCATATGAACAGGGTCGTCACCCATGAACTTATTCACGCCTTTGATCACTGCAGGGCCCATGTTGATTGGTTCGATAATTTCAAGCATTTGGCCTGTTCAGAGATCCGGGCAGCCAATCTGAGTGGAGACTGTTCCTTTAGTAATGAAATGGGTAGATTCAACTTCGGCCTTAAACAACACCATCAGGATTGTGTTCGGGATCGAGCCCTTCGCTCCATCTTAGCTGTTCGGAAAGTGAGTCGAGAAGATGCAGAGAAAGCAGTGGACAAAGTCTTTGATAGCTGTTTTAATGACTTTGCGCCCTTTGGAAGAATCCCACATGGCAACAATGATGCAAAATATGCATACAGAGAATTCCAAAATCGAAATCGCTACTATGCAAAtctttaataaaaagtaaataataaaaaggtgtaTTTCAAAGGTGCTATCATACTGATTCGCTCAATAGCACCAGTTTTGTTGCTTCTGAGCTCTGCATGGGTGCAGCCCTAACGGGAACAACATTCATGCTTTTGTATATATGACTAAAACGCCACATGACTTGTGGcaagttataaaataatttggtgaaaataccatatttaaaaaataagtacttTTTATGAACTTgtaaccaaaatgttttaataaaacatgaaaaacacattggTGTCACCTGcaaaaagttgtatttattggttGCTATATAGATTGTTTGTAAGTTTGAGTTAAggtttcatatttatatttttcatcttgTAGTGTTTGATTAAACAGGAATTTCCAGTCCTGTTTATTTGGGATCTTTTAATAGACGTCTTTATTCCTCAACCATCTGTCTTACTGAATGTattcaaaacattgtatttttcctgtTCAGTCTGATTAATTCAAGGGGATACATGTagtgttatttaacaattgCCCATAATTACAACCAGAATAAAAAGAAAGccaaaaaacaatattctgCAATAGCACATCAGTTGTTTTTTATAGACATATAACAATTTGCAAGTTCATTTAGATTTTATaaggctgttttttatttttaggtttatatatttaataatcatatatttCCTTGCTTCAGACAGTAGAGGGAGCTTTCACACCACCTATCTATTTTTGATCGAAAAAGGAAAACTTTTAGTCACAGCACTCATTGTATTTTTGCCACTTATATGCTAAGCAG

Function

symbol description
atp23 Predicted to enable metal ion binding activity and metalloendopeptidase activity. Predicted to be involved in mitochondrial protein processing and mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proteolysis. Predicted to be extrinsic component of mitochondrial inner membrane. Orthologous to human ATP23 (ATP23 metallopeptidase and ATP synthase assembly factor homolog).

NR:

description
PREDICTED: mitochondrial inner membrane protease ATP23 homolog isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K18156 ATP23, XRCC6BP1; mitochondrial inner membrane protease ATP23

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006601 True 1584 mRNA 0.37 6 11116560 11119469

Neighbor

gene id symbol gene type direction distance location
AMCG00006594 NA coding upstream 243003 10856045 ~ 10873557 (+)
AMCG00006593 arid2,LOC106576411 coding upstream 287051 10828315 ~ 10829509 (+)
AMCG00006595 NA coding upstream 297956 10786260 ~ 10818604 (+)
AMCG00006596 NA coding upstream 352710 10761168 ~ 10763850 (+)
AMCG00006589 NA coding upstream 498788 10593297 ~ 10617772 (+)
AMCG00006606 NA coding downstream 186422 11305891 ~ 11321973 (+)
AMCG00006610 NA coding downstream 539418 11658887 ~ 11706824 (+)
AMCG00006609 syn3,LOC106576044 coding downstream 615214 11734683 ~ 11735631 (+)
AMCG00006608 syn3 coding downstream 654517 11773986 ~ 11790179 (+)
AMCG00006614 ptpro coding downstream 764468 11883937 ~ 11902046 (+)
G110722 NA non-coding upstream 746629 10369715 ~ 10369931 (+)
G110681 NA non-coding upstream 1084714 10030426 ~ 10031846 (+)
G110590 NA non-coding upstream 1659649 9456665 ~ 9456911 (+)
G110558 NA non-coding upstream 2228068 8887686 ~ 8888492 (+)
G110523 NA non-coding upstream 2321229 8795060 ~ 8795331 (+)
G110849 NA non-coding downstream 921 11120390 ~ 11120735 (+)
G110883 NA non-coding downstream 230415 11349884 ~ 11350117 (+)
G110916 NA non-coding downstream 552100 11671569 ~ 11672448 (+)
G110930 NA non-coding downstream 673699 11793168 ~ 11793535 (+)
G111008 crebl2,crbl2 non-coding downstream 903341 12022810 ~ 12024549 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 1548284 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 2392494 8710750 ~ 8724066 (+)
G110445 NA other upstream 2939774 8175760 ~ 8176786 (+)
G110279 NA other upstream 3461366 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 4204306 6911876 ~ 6912254 (+)
AMCG00006624 NA other downstream 1026276 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 1500593 12620062 ~ 12651815 (+)
G111197 NA other downstream 1891715 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 2814197 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 9818028 20937497 ~ 20944977 (+)

Expression


Co-expression Network