AMCG00006602


Basic Information

Item Value
gene id AMCG00006602
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11213847 ~ 11231189 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006602
GTGTGACGTACCTTAGCTGCCGGGCCAATAGGAGCGCTCGCCCCGGGGAGTCTGGCTCGGAGTTGCAGCCGCCGCGTCGAGGCGAAGTCCCGCAGAAAGAAAAGTTTTGTGGAGGGCTGCGCGGAGGTGCTGCTGTCGGGCTTTCCGTCCTTTCAACTTTTCAACAAGAATGAGCCAGGACTGACTGGAATATAAACCGCCGCCTTTCGCTTTCGAGGTTCCCGCACAAACTGGGCTTCAACTTGGATGGGATTTGGGGCGCATGAAGGAAAGTGAGTGAGTCAGAGGGGGGATTGCAGCCAAAGTCAAACATGTCCGCGGCCAGGCAGCCGCTCCGCGCTGGCCGGCTCTCCGTcatcctgctgctgctctggGCCCTGGAGACCTGCTCTCTGGGGATGTACGAGCGGCTCAAGTGCCCGTCGCCCTGCACATGTGTGGAGCAGCTGCTGGACTGCAGCAAGAGGAGACTGGAGAAAGTCCCCGAAAACATCCCTCCCTGGACCGTGCACTTgGATTTGAGccataacaaattaaaatcacttgATGGAACCCCATTTAGAAAAAGTCACAAACTTCAAGAAATaaaatTAAACGATAATGAATTGGATTCTGTACCAGATTTGGGGCCTctttcacaaaacattacatttctcaaCTTagcAAACAACAGGATTTCAAAGTTAGTCCCAGAACAGCTGAAGCACTACAGATCCCTGGAAACCTTGGACATCAGCAGCAATAACATTGTGGAACTCAGAGCAACGTCTTTTCCTgatctgcaattaaaatatttatttatGAGCAACAACAAGATCTCTTTAATGGAGCCAGGCAGTTTTGACCATTTGTCAGGCACTCTGCAGATTTTGAAGCTCAATAGAAACCGCATTTCAGCCGTTCCTTCCAAGATGTTTCAGCTTCCCCACCTGCAACACCTagaacTAAATAGAAACCGAATCAAGAAGGTGGACGGCCTGTCGTTTCATGGGTTACAAGCCCTTAAGTCATtgaaaatgcagagaaatgGCCTCAATAAGCTTATGGATGGTGCTTTTTGGGGACTAAGCAACATGGAAGTTTTACAACTGGATCATAACAATTTGACGGAAGTGAGCAAAGGCTGGCTGTATGGGCTGTTGATGTTACAGCAGCTCCACCTCAGGCAGAATGCCGTCAGCAGGATCAGACCTGATGCCTGGGAGTTCTGCCAAAAACTCAGCGAGCTAGATCTCACCTCAAACCAATTAACACGACTGGATGAATCCAGCTTTGTTGGCCTGAGTCTGCTTGGTGAGCTCCACTTAGGAAATAACAAAGTGAGCTTCATTGCTGATGGCGCCTTCCGGGGTCTATCCCATTTGCATACTTTGGATCTGAAAAACAATGAGATCTCGTGGACTATTGAAGACATGAATGGAGCCTTTTCTGCTTTGGACAAACTTAAAAAACTGCTTCTTCAGGGAAATCGAATCAGATCCATCACCAAGAAATCCTTTTCTGGTCTAGACACTCTTGGATACCTAGACCTGAGCAACAATGCAATAATGTCTATTCAAGGGAACGCCttttcacaaatgaaacaaCTTGAGGAATTGCACTTGAACACGTCCAGCCTGTTATGTGATTGCCAGCTAAAATGGCTGCCACAGTGGGTGGCAGAACACAAGTTTCTGCCCTTCATTAATGCCAGCTGTGCCCATCCCCAGTTGTTGAAAGGAAAAAGCATATTTAACGTGATCCAAGAGGATTTCGTGTGTGATGATTTCCCCAAACCTCAGATTAGAGTGCAGCCTGAAACTCAGTCTGTCATAAAGGGATCCAATGTGAGTTTTGTGTGCTCCGCTGCCAGTTCAAGCGACTCGCCAATGACAATCGCGTGGAAGAAAGACAATGAGGCCCTGGACGATGCCGAGATCGAGAACCAGGCCCATGTTCGGGTTCAGGAGGGTGAAGTCATGGAATACAATTCTACCCTGTGGTTGCGCAGTGTGGAATTCAACAGTGAAGGCAAATATCAGTGTGTGATCTCCAATCAGTTCGGCTCGTCCTACTCCACGAAAGCCAAGCTCACTGTGAACATGCTTCCATCATTTACTAAAATGCCCATGGACCTCACAATAAGGGCAGGCGCCATGGCCCGTCTGGAGTGTGCGGCCGTCGGGCACCCCACCCCGCAGATCGCCTGGCAGAAAGACGGTGGCACGGATTTTCCTGCCGCCCGGGAGAGACGCATGCATGTGATGCCAGAGGACGATGTTTTCTTCATAGGGGACGTCAAGACCGAGGACATTGGAGTCTATAGCTGTACAGCTCAGAACACGGCTGGGACCATATCTGCTAACGCGACTTTAACTGTTCTAGAAACGCCCTCTTTCCTGCGTCCTCTGATGGATCGAACTGTCGCAAAAGGTGAAACGGCAGTTCTCCAGTGTATTGCCGGTGGAAGTCCTCCCCCGAAACTGAACTGGACCAAAGACGACAACCCTTTAGTTGTGACAGAAAGACACTTTTTTGCTGCTGAAAACCAGCTTCTTATTATTGTCGACACGGACGAGGAGGATGCCGGGAAATACACTTGTGAAATGTCTAATACGCTAGGCACGGAAAGGGGAAATATCAGACTGAACGTCCTCCCGAACCCGAACTGTGACTCCACTCAGAATGCTGTCCAGGCGGCAGAGGAGGACGGCTGGACGACGGTTGGCATCGTGATCATTGcggttgtgtgctgtgtggtaGGAACGTCGCTTGTTTGGGTGGTCATCATATACCACACACGGCGGCGCAATGAGGACTGCAGCGTGACAAACACAGATGAGACGAATCTGCCAGCAGACATTCCCAGTTATTTGTCATCGCAGGGAACGCTGGCTGACAGACAGGATGGCTACGTTCCATCAGAAAATGGCAGTAACCACCAGTTCATGGCATCTTCGATTAGTGGGTTTTATTTGCAGCAAAGAGATTTAAATGgCATGTGTCACCTGGATAATGGCAGCGAGGCAGACCTGGAAGCAGTAATGGACCCTCTTCTCTGTCATTACCAAGGAACCACAGGATCTATGCACACCAGAGAAAATATTTACAGCAGTGACTCATCTGAAGGCTTCACAGGTTGTGCGGCTGATCAGAGAGCGCTGTGCATCGATTCTTACAACGGCAGTCTGACGTACTCCAAGAAGGACTACTATCCATGTGGAAACCTTCTGGAGGATCCGTTTGACCCTGCGCCCACCAGCGTCTTAATGCAGCTGCCCAACGGGAGCCTCCACAGCTCCATTCTCGCTGCCAATGAAGGATTATCCCCAGACATGGACTGTCAAGACTGTAACCGGACGCGAGAGAGAGTGCCATCGAACACGTTCATGGGGACATTTGGGAAGACTCTATGGAGGCCGCAGACAGATTTCTATCCCAACTACAACCAGGCTGCTCCGTACAACCCAATGACGTTACATGAAAACCCGTACACCGCAGTGGACACGGACGCCGAGCCCGGGGAGCGTCGGCCCACGCAGCCCGTGCAGTCGAAGCCTGAGCAGAGCACAGACATCTATGAGCAGCCGTTTGATAATGACGGGGAGACGACCTTCACGCCTCGCCGGACAAGCACATAGCGGCGTGTCCGTCCGCGCGTCTCCAGgaactgaatttttttttttttaagaaaattaagCCAAAAAAACTACCTCAGTACTGAACAATGTGTGCATCGTTTGAATGTCATTCGGAGAAAACACAGTTACTTATGAACTTTGCAAAAGAGAACAGCTTGGACTGTTTGAACAATGTTAAAAGagtttatgcattttatacaaattatataattttgtaaattaatagtGTAAATAGGACCCTaagtattttgctttttttttttataattaaaaaatgttttaatgaaatgtctATGTTTAAGAAACTTTTACAATTTTAAGCTTCTGATAAATGTTAGGCACCTTTTGCacataaatattaacaataaaacatctttCCTTGTGCTgctataaacataaaaatgacatgctg

Function

GO: NA

KEGG:

id description
K24610 LRIG1_3; leucine-rich repeats and immunoglobulin-like domains protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006602 True 4032 mRNA 0.48 19 11213847 11231189

Neighbor

gene id symbol gene type direction distance location
AMCG00006604 NA coding downstream 95981 11102085 ~ 11117866 (-)
AMCG00006605 NA coding downstream 160950 11052052 ~ 11052897 (-)
AMCG00006603 NA coding downstream 198478 10994638 ~ 11015369 (-)
AMCG00006600 NA coding downstream 269038 10935397 ~ 10944809 (-)
AMCG00006599 NA coding downstream 296207 10907697 ~ 10917640 (-)
AMCG00006607 fam19a2,LOC103364248,LOC108248567,LOC103023565 coding upstream 319125 11550314 ~ 11551561 (-)
AMCG00006612 NA coding upstream 381406 11612595 ~ 11619824 (-)
AMCG00006613 timp3,LOC106609153,LOC100696712 coding upstream 507030 11738219 ~ 11755480 (-)
AMCG00006611 rerg,LOC107569200 coding upstream 594712 11825901 ~ 11839726 (-)
AMCG00006615 NA coding upstream 676613 11907802 ~ 11931159 (-)
G110757 LOC103376870 non-coding downstream 610114 10603095 ~ 10603733 (-)
G110733 LOC103376870 non-coding downstream 743787 10421561 ~ 10470060 (-)
G110720 NA non-coding downstream 908600 10304931 ~ 10305247 (-)
G110594 NA non-coding downstream 1736341 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 2199521 9010140 ~ 9014326 (-)
G110917 NA non-coding upstream 440380 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 557751 11788940 ~ 11789234 (-)
G110940 NA non-coding upstream 558863 11790052 ~ 11793501 (-)
G110942 NA non-coding upstream 563347 11794536 ~ 11796342 (-)
G110957 NA non-coding upstream 668774 11899963 ~ 11902168 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 1106562 10087275 ~ 10107285 (-)
G110605 NA other downstream 1653743 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 2214583 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 2419785 8783905 ~ 8794062 (-)
G110507 NA other downstream 2489495 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 786680 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 818305 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 840201 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 905993 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 1645103 12876292 ~ 12878656 (-)

Expression


Co-expression Network