AMCG00006604


Basic Information

Item Value
gene id AMCG00006604
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11102085 ~ 11117866 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006604
ATGGGCCCTGCAGTGATCAAAGGCGTGAATAAGTTCATGGGTGACGACCCTGTTCATATGGGACTGCTGCAAAGTTTACCGCCTGTTCGTAATAAGGactacaaaaagaaaaagagagagaagagcaaaGTGGCCGCCAAGAATgcaaagaatgaaaagaagaaagcatCTCGAATTAAATCTTATGATTACCAGGCCTGGGACAAATTTGATGTGAATAAAGTATTAGAAACCCTGGACAAAGAGGACAGTCCAACTGAATCGCATGAATCCGATTCTGATGAGGATGGGCTGCATATCGACAGAGACGCAGCACTTTCTGAGAAGGAAAGAGGCAATGATTTCTTCAAAGAGGGGAAATACGATGAGGCAATAGGCTGTTATACCAGAGGTATGGATGCTGATCCTTACAATCCAGTTTTGCCCACAAATCGAGCAACTGCTTTCTTCAGGCAGAAAAAGTATGCTGTGGCTGAGTCTGATTGTAATCTAGCCATTGCACTGGACAGAAACTACATAAAAGCTTATGCGAGAAGAGGAGCAGCTCGGTTTGCTCTTAAGAAATATGAGAGCGCACAAGAAGTGGCTCAACCAGAAGAAAAGGGAACCTCCAAAATGGAAACGCCACCAGTTGACGAGAGTGAACAGAGGCGGACTGAAGAGCAGCAGGCAAAGCTGCAGGCTGTGGTGCAAAAAGATCTGGGCAATGGATATTTCAAAGAAGGAAAGTACGAGGCGGCTGTGGAGTGCTATACCAGGGGAATGGCAGCAGATGGCACTAATGCACTATTGCCAGCAAACCGGGCAATGGCTTATTTGAAGCTGCAGAAGTACGAAGAGGCCGAGGGCGACTGTAGCAGTGCTATAGCTCTGGATGCTACTTACACAAAGGCCTTCGCCAGGAGGGGGAGTGCAAGAGCAGCGCTGGGGAAACTGAAGGAAGCTAAAGAAGattttGAAGCTGTTTTGAAGCTGGAACCAGGAAATAAACAAGCAATGAATGAACTTGAGAAAATCAAGAATGAGATGCTGGCGAAAGGTTTGTTATCAGAAGAGCAGTTTGCAGAACAGCACACTCACAGCACCAGTCAAAGGAGAATAGTACAGCCAATCAATAAACCACCTCATCTGCGTTCAACAAAGCCATTGAGGAGGATTGTTATTGAAGAAGTGGGCAGTGAGATTCCAGTTCTGCATGGGTTAGAAATGGCAGCTACCTCGGCACCATGTAAAGTGGCATCCTCATCCATAACAGAAATCGGTACAAGCCAGGAAGGATCTGTGCCGCTAGAATGTGCCCCTTGTGCCAAGATCCTAAAAATAGAGGAGATCTCAAACACTCCAGCACATCCCCCTGGCAAgATTCCCAACACAGACCACTCGAACAAGTTAACTGAAAAAAGTATTGATGTGAGAAATGCTACAAGTCAGGAAGATGCATCTTCCTCATCTGAATCTGTATCTATTCCACCCATCCCTGCAAACGCCTTTCAACTGGAAGCAGATGTGAGGAAGCTAAAGGATTACCCAGACATGATCTACAAGTACTTAAAGcaAATAGAACCATGCATGTACCCCAAAATATTTCAGAAGTCTTTAGAGCCTGATCTTCTCAACCAGATTCTGAAGGTGTTTCGGGACTTTTATATACAGCATGAAGATCCATCTCTGATATTAGAGATTCTGAGGAACCTGGCAGAAGTGAAGAGGTTTGACATGGCAGTCATGTTTATGTCTGCAGGAGAAAAGAAAGATGTACAAGAATTATTCTCCTGCATTCATCAAGCAGGCTTAGAAGATGAAACAGTCAGATCTCTTCGGAAGAAATATGGCCTCTGATTTTAGCTTATGATCCCATAAATGGAGGACTTTGTAAAATGCTTTTGGATTGGAACTGAGCAAGTGACCTGTGCAGAGCAGAGCTCCAGcaattaaacatgcatttggCATCTAGcgatttcagtgtatttatcaaaacaaactaaataaaacggAACCTATTTTGTGTCAGTATTTAGTATATAAATAGAAACCCATTTTGTCTGTGTTCCCCATCTGTTTGTTCAAGTAATACCTGCTCTGTGCTGATACTTTGGATCGGATATTAAACATCTCGTCTTACTCAGATACGATCATAACAAATCTTTGTAAACCTTATCTCTTAAAGCACGGTTTTGAATCCTGCCATGGCAACAGCTTGAATGCCCAATTTCTGGTGAAGCTGCACCACGTGTACCAATCCCTAAATCCCATGTACTGGGCATGCTGCAGTTAACTGTTGATATGCAGCGTCTCAGCACATTGTGGTGTCTGTAACGGATATGGCTGACCAGATCGAACCAATTTCCAGCAGCACCAGTTATAGCTCTGTTACACTATAATGTCCAAAATGCATGGAACTCGGTCACTGCAAATCAGGAATGGCAAATCTGGTGTCACACGTAACATGCTAATAATCCAAACAGCTATTAATAGCCCATGTACtgaaatctgtttgttttttaaatctaatcaTTAAGCCTGGATTTACATTTTCCCCCTTTATGTTTCACTCTGTTGGTTTGAGTGCagaaaaggcaaaataatttcaattataaatgtaGTTCATACAAATCTAATCCTTTAcatatgttttatgaaaatacactatttaaaatgtcagttcaATATACTGGTTTCTTTTTTAGAAGAagaataaattaactttaataattTGGGGCCCATTGTACATCTCACACAAATGCAACTAGTTTAATCTTTGAAGACTGCCAATTACACAGTGCCCCTAATACATATCTCTGCAGCATGTGTGCAAGAAGAGCTTTACAATCAGATTCAAAACTTAAACCACAATACTACtgctgtgcctctctctctctctggggaaTTGCAACAGCCATGTACAGCCACCTGTTCAGCTAGTGTAGCTGTAATCGGATATTCCCACAGAATAATTCCAccagctctctctctatctcagtcgtccatttatatttttctgccCTTTCTCTTTGATTCCAAAGTTggcttcaaaaacaaatttaaactatttttattttatattgaccCGAGTACTGGCTGAACTCGATGATTGTTCCTTTAGTCTCTTTTATCAGCAAGTGAATAACTAATGAACACTTTGGACTATTTATCTCTAGTTGTATATCATTTCTGAATTTGTGTGACTGTTTTCTCACAACAGTGTTTTTATCTGTTTGTCTTTGCTATTTAATACTTGGTGTAATGCCATACATTGTTGCTGGGTTTTTGTCATTTCTGGTGTTTGCACATTTCATCGTATTACTGAGAATGTAAGGCCATCTATAGTGTAGGGAGTTGCATCTGAAATCTTCCTCctagcaataataaaaacaaatctgcattggCCAACGTCACTCTTGTCTTTTTGTTCGTTTTCCATTAGTAGTGCCCAACGTGTGGGGACACTTTATCTACGAGTCACTTGATCGCTTTCTTATTTTAGCTACTTTGgatttgtgaaaaatatttagATCCAACAAAGATGGGCTTGAACTGGAGCATAGAACTTGagtattcagtattcagtaaatgcattttgttcttaattttaaCAATGTACAGTTTTTACATCGTAATGGCAAATAATTGTATTGGTTTACAGTTTTGTATTAGTTGTTTTACTGTGTAAACTGCACCAAGAAACAAATGGTTAGGCAAGAACAATGCTTATTCATCAGGTATTTATTCAGAAATGATTCCACAGATACTGTGTTCCAACACGGATCAATTCCATCTGTTCAGGCCATATTATATTCTGTTTGTTCAAGAATGTTTGCatgtaaaaattattaaaattgctCTTAATCCAGCAATTTTAGCCTGATTTTGTGCCtatagattttaataataac

Function

GO: NA

KEGG:

id description
K23002 RPAP3; RNA polymerase II-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006604 True 3893 mRNA 0.40 15 11102085 11117866

Neighbor

gene id symbol gene type direction distance location
AMCG00006605 NA coding downstream 49188 11052052 ~ 11052897 (-)
AMCG00006603 NA coding downstream 86716 10994638 ~ 11015369 (-)
AMCG00006600 NA coding downstream 157276 10935397 ~ 10944809 (-)
AMCG00006599 NA coding downstream 184445 10907697 ~ 10917640 (-)
AMCG00006598 NA coding downstream 209963 10877715 ~ 10892122 (-)
AMCG00006602 NA coding upstream 95981 11213847 ~ 11231189 (-)
AMCG00006607 fam19a2,LOC103364248,LOC108248567,LOC103023565 coding upstream 432448 11550314 ~ 11551561 (-)
AMCG00006612 NA coding upstream 494729 11612595 ~ 11619824 (-)
AMCG00006613 timp3,LOC106609153,LOC100696712 coding upstream 620353 11738219 ~ 11755480 (-)
AMCG00006611 rerg,LOC107569200 coding upstream 708035 11825901 ~ 11839726 (-)
G110757 LOC103376870 non-coding downstream 498352 10603095 ~ 10603733 (-)
G110733 LOC103376870 non-coding downstream 632025 10421561 ~ 10470060 (-)
G110720 NA non-coding downstream 796838 10304931 ~ 10305247 (-)
G110594 NA non-coding downstream 1624579 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 2087759 9010140 ~ 9014326 (-)
G110917 NA non-coding upstream 553703 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 671074 11788940 ~ 11789234 (-)
G110940 NA non-coding upstream 672186 11790052 ~ 11793501 (-)
G110942 NA non-coding upstream 676670 11794536 ~ 11796342 (-)
G110957 NA non-coding upstream 782097 11899963 ~ 11902168 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 994800 10087275 ~ 10107285 (-)
G110605 NA other downstream 1541981 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 2102821 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 2308023 8783905 ~ 8794062 (-)
G110507 NA other downstream 2377733 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 900003 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 931628 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 953524 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 1019316 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 1758426 12876292 ~ 12878656 (-)

Expression


Co-expression Network