AMCG00006605


Basic Information

Item Value
gene id AMCG00006605
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11052052 ~ 11052897 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006605
ATGCTAACGTACTGGTCCAAGAGGAAGTTCCGTCCTGTTACTGATTTCAAAGATGATTATAAATGTTTCCTTCCACCTCAGCTGGATGTGCCCCTGAATCTGTTGTCTCAGTCAGACGACTTCATGAACTGCTCCAACAGCACTGTTAATGGCTCTTTCTATTCTTCAGGGGTGATTTATGAGGTTCGTATTGGACACCGTCTTGTGGTACACTGTGACAGCAAAATACCAGATGCAAACTCAAATGTCTTTTGGTTAAATCCCAGCCAGGAGCTGCTGAAGTCTGGAGACCGCATTGAAAATCTCAAAGTGTTTCCAAACGGAAGCCTGGAGCTCAACGATGCTCAAACAGGGAACTCTGGGATTTACACTTGCATAGTAATTAACCACAGGAGAAATCTGAACGAAACCATTGAAGTCACAGTCAAGGTTAGCAACTCCACAAGTGACAAGACCCGGCCTCACGAAACCTTTAACACAGCCTTCACGACGCTCGCCGCCTGTGTCACCAGTATTGTCCTGGTACTGATCTACCTGTACCTGACCCCTTGTCATTGCTGCTGTAAGACAAGGAAAAACCCCAGAAAACCAAATCTAGGTAGCGCCCGATCCTCCATTCTGAGTGGCACTCCCAGCAACGAAGCCCAGCCAGATAGAAAAGCGAGCACCGGTAAAAGAGTCGTGTTCTTGGAACCAGGAACCGAACTTCAGGAAAGTCAGAACGGCAAAACTAAACTGCTCTCATCAGAGCAGGTCATGACGGAAAGCATCTTAAAGAACAGCAAAATGAAGCTGGATTCAGACTCAGTTACCTCATTGTTTTCAGACACACCTTTTATCGCTTAG

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006605 True 846 mRNA 0.46 1 11052052 11052897

Neighbor

gene id symbol gene type direction distance location
AMCG00006603 NA coding downstream 36683 10994638 ~ 11015369 (-)
AMCG00006600 NA coding downstream 107243 10935397 ~ 10944809 (-)
AMCG00006599 NA coding downstream 134412 10907697 ~ 10917640 (-)
AMCG00006598 NA coding downstream 159930 10877715 ~ 10892122 (-)
AMCG00006597 NA coding downstream 235890 10762179 ~ 10816162 (-)
AMCG00006604 NA coding upstream 49188 11102085 ~ 11117866 (-)
AMCG00006602 NA coding upstream 160950 11213847 ~ 11231189 (-)
AMCG00006607 fam19a2,LOC103364248,LOC108248567,LOC103023565 coding upstream 497417 11550314 ~ 11551561 (-)
AMCG00006612 NA coding upstream 559698 11612595 ~ 11619824 (-)
AMCG00006613 timp3,LOC106609153,LOC100696712 coding upstream 685322 11738219 ~ 11755480 (-)
G110757 LOC103376870 non-coding downstream 448319 10603095 ~ 10603733 (-)
G110733 LOC103376870 non-coding downstream 581992 10421561 ~ 10470060 (-)
G110720 NA non-coding downstream 746805 10304931 ~ 10305247 (-)
G110594 NA non-coding downstream 1574546 9476482 ~ 9477506 (-)
G110576 NA non-coding downstream 2037726 9010140 ~ 9014326 (-)
G110917 NA non-coding upstream 618672 11671569 ~ 11672483 (-)
G110939 NA non-coding upstream 736043 11788940 ~ 11789234 (-)
G110940 NA non-coding upstream 737155 11790052 ~ 11793501 (-)
G110942 NA non-coding upstream 741639 11794536 ~ 11796342 (-)
G110957 NA non-coding upstream 847066 11899963 ~ 11902168 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 944767 10087275 ~ 10107285 (-)
G110605 NA other downstream 1491948 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 2052788 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 2257990 8783905 ~ 8794062 (-)
G110507 NA other downstream 2327700 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 964972 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 996597 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 1018493 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 1084285 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 1823395 12876292 ~ 12878656 (-)

Expression


Co-expression Network