AMCG00006609 (syn3,LOC106576044)


Basic Information

Item Value
gene id AMCG00006609
gene name syn3,LOC106576044
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11734683 ~ 11735631 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006609
atgaaaacttgtttttttattcctgtCTGCATCAGGTCTTTCAAACCAGACTTTGTTCTGATTCGCCAGCATGCCTACAGCATGACCCAAGGAGAAGACTTCCGCAGCCTTGTGATTGGCCTGCAGTACGGGGGTGTCCCTGGTGTGAACTCTCTCCTCTCCATCTACAACTTCTGTAGTAAACCCTGGGTGTTTTCTCAGATGATAAAAATCTTCCATACTCTGGGTCCAGAGAAATTCCCTTtgaatgaacaaacattttaccCTAATCATAAAGAGATGGTGAGTGTTTTCCTCTCATAA

Function

symbol description
syn3 Predicted to enable ATP binding activity. Predicted to act upstream of or within neurotransmitter secretion. Predicted to be located in synaptic vesicle. Is expressed in several structures, including DEL; Rohon-Beard neurons; central nervous system; olfactory epithelium; and retinal neural layer. Orthologous to human SYN3 (synapsin III).

NR:

description
PREDICTED: synapsin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006609 True 303 mRNA 0.43 2 11734683 11735631

Neighbor

gene id symbol gene type direction distance location
AMCG00006610 NA coding upstream 27859 11658887 ~ 11706824 (+)
AMCG00006606 NA coding upstream 412710 11305891 ~ 11321973 (+)
AMCG00006601 atp23,LOC106609469,LOC106576246 coding upstream 615214 11116560 ~ 11119469 (+)
AMCG00006594 NA coding upstream 861126 10856045 ~ 10873557 (+)
AMCG00006593 arid2,LOC106576411 coding upstream 905174 10828315 ~ 10829509 (+)
AMCG00006608 syn3 coding downstream 38355 11773986 ~ 11790179 (+)
AMCG00006614 ptpro coding downstream 148306 11883937 ~ 11902046 (+)
AMCG00006617 tbk1 coding downstream 251829 11987460 ~ 12000919 (+)
AMCG00006620 NA coding downstream 277455 12013086 ~ 12014321 (+)
AMCG00006616 NA coding downstream 296024 12031655 ~ 12054027 (+)
G110916 NA non-coding upstream 62235 11671569 ~ 11672448 (+)
G110883 NA non-coding upstream 384566 11349884 ~ 11350117 (+)
G110849 NA non-coding upstream 613948 11120390 ~ 11120735 (+)
G110722 NA non-coding upstream 1364752 10369715 ~ 10369931 (+)
G110681 NA non-coding upstream 1702837 10030426 ~ 10031846 (+)
G110930 NA non-coding downstream 57537 11793168 ~ 11793535 (+)
G111008 crebl2,crbl2 non-coding downstream 287179 12022810 ~ 12024549 (+)
G111063 NA non-coding downstream 615126 12350757 ~ 12353363 (+)
G111148 NA non-coding downstream 1023940 12759571 ~ 12770925 (+)
G111161 NA non-coding downstream 1110292 12845923 ~ 12847502 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 2166407 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 3010617 8710750 ~ 8724066 (+)
G110445 NA other upstream 3557897 8175760 ~ 8176786 (+)
G110279 NA other upstream 4079489 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 4822429 6911876 ~ 6912254 (+)
AMCG00006624 NA other downstream 410114 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 884431 12620062 ~ 12651815 (+)
G111197 NA other downstream 1275553 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 2198035 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 9201866 20937497 ~ 20944977 (+)

Expression


Co-expression Network