AMCG00006619


Basic Information

Item Value
gene id AMCG00006619
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11965268 ~ 11984815 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006619
ggcacagacagaaacactgcTGTTTCATCCAAGAGCTCTTTTAGGGGAGGTGCCTGTCTGTCTACGTATTGCACCGATACACAGAAATCGAAAGTTTGTATGATAACGATTATCATAGCATATCAGGGAGAAGACACCACCGCTGTTGCTGCGAAAATGAATTCGTCAGACAGATTCAGTAACCCTGAGTATATCAACTGGCTTAAATTGGGGATCTGCCTCATGGAAATTAAGCCCCTGCTGTCAAATCTGATAGAAGAAGAACTCAAACGTTTCcatgagaaattaaaatgcGCTGTGAAGGAAAAATGGAAAGATGACATATGCTGTTCTTCAGCCTGTTCCATTGAAAAGGACCAAAAGGCATACATGCCAGGCCGTCAAGCAGATATTACTGAACTGGCTAATTTTGATATTTCTGCTCTTGTGGTCCTCATGAAACATTgtgtgcattttgaaaatggagTCCCTGAGACAAGCCTTGACAAGattcaGGAAATAAGGAATACGTTAATGCATTCAGCAGAAATGAAGATCTCATCTGTAGATGCAGAAATattcttccaaaatatttttaaatgcattgatgAACTGAAAAATAGTGAAATAAATCCTCTGGCAAAAGACATACTCCTCAGACTGTCGGAAAAAATCAATCAGATTCATAGTTCTCAACTTAGAATACATCTTCAGGAAGATTTGGAGACCGAGTTCACTTTTGTCAAGGAATATGTAAAAGTACTTTGTCTGGAGACTGATGAAAGCACAATGCAGAAAACAAATAGGATTCTGATTGAGCGATGGCAATGGTTTTTGCAGAATGGAAGTACTCATGGAATCGCAgaacattttagaaaagcatATGATGATCTCAAAGAGCAATATCAAAAAATCCATAAGAAAATAGACAATATGGATGGTGACATTGTTAGTCTGGACAAAAGGGTTACACAGTTAGAAGgttATGTAGGGAAGGTCACAGTGAATGGAGTGGAATATAAAGGACAGACTGTTCATGTGGCAAAGGTGGATTCTCATCAAGAAGCTGCGAAGATCGCTCTTGAGCATTTGAGTGAGCAACAGAGATCTGTAGTTAAAGCCAAAGACACACTGCTTGTTGCTATAAAGGAGGTTCCTTTCAATGATTGTGATAAAAAGAGATTCACCTCAACGGTAACCTGTCAGATAAAGGGCTTAATTGTTAGATCTTCCGGAAGAACCAGAGAAGAGGCCATCCAAACATTCTACAGAAAGAGTGGATTAGTGCTTGACATTTTGGATCAGAATTCagGGGATGATAAAAAGCAAGCTCAGAAAAATGCAGCAAAGAATGCTTTAACTGCTTTTAATCAGATGTTTGGTGAGAGGATGCATCTCAAAGATTCAAATAATGACTATAAGGGGATACTTCAACACTTCTTCCAGAAAAGGAAAATGCCATTGCCAGTCTATAATACCCATGACTCAGAGGAGAATGTAGAAAATATTGTCCGAGAACATTTCTCcaaatcagaagaaaataaacttgacATCCAGTATGAATCTACTGAGAACAAAACGTTTACATGTGTGTTGACTATTACAACACAGTTCCCTTTTGTTTCCCAAGgCAGTCTCAGTAAATCTGCCAATCAAAATGCTGCTAAAGAAGCTCTTCGACGGCTTGCACCAATCCATGGGTTTCAGACCGACACCAAAATACCTGAGGGAAGCTACAGGAACGCACTGCAAAGTTTGCTTCAGAAGGCCCAGCAGGAGATACCTACTTATAAGATCATTGAAGATAATGCAGtagAAGAATTTGTTTCCACGGTCACTGTGTCCCTGAAGAACCTACCAGTCAATATTCTGAAGGAAAAGGAATATGAGAGTGAAGATGAAGCTGTGAATGAAGCGTACAACCAACTAAGCCTAGTCCTGAATTCATCAACGGTTGCTTCAAaTCCATCTGATTCCAAGGAAAGGGTCCTTCGGTGTCTGGGAAAAGACAGTGTCAAAGAAACAATCTGTAAAGTTCAAAACAGATACAGATGTCAGCTTATTCTGAATacatctTTAAAACCCCTGTTCCCACTGGACACCTCAGATCACAACACAGTCAATGGAAACTACAAGGGGGCACTTCAGGAAATTCTTCAACAGCTAGGTCAAGACACCCCCTCCTACAGCACCAAAAGCACCCATGactTGGCCAAAGCTATGCAAGAACTGaagcttgaaaaaaaaatgacacacCTTATTTGTCAAGGATATTTATCTTTGGTAACCGTTACTGGAAAAAATATCCCAGTGGAAACCCTTGATTGGTATAGCACTGAAGAAGCAGCATCCAATGAATCATACAAGATATTAGGCAGCTTTCTATATAGTCTTGGTGAAATCTCAGGTACAAGTGAGGAACTGGCAAAAGAAGCAGCAGCAAAAGAGGCTATTACCAAGATGGCAACCTTGAAATGTATAGAGTATAGAGCAGCTGAAACCTACATGGAGGAACTTGAGCGATGTCtgataaatgaatacaaatatgaagAAACATCATCTACAGAGTTGTATTCTGGATCACTGCAGCTTTCTTTTAGAGATTTCAccgtgaaaacaaaacagaaacatccATCGAAGAAATTAGCTCAGAAGGAAATCTGTGAAAAACTTGCAGGTGTATTGGCCATAAAAGCATCAGACAAAAATGATAAGACACCACTGAAAAATCGGATCCAGATTTGGTTCCAAAGGGAAATTAAGCAAATCCCTGAATATGTAGACACTGGCAGCATATGTGGAGACTTTGGCTGTCATATAACCTTCACTGCAGATATATTAGTGACTCAGAAAGATCCCCAGCCAAGCCTTgaagaattaaatgaaatactgtGCAAGTCGGCTCTACAACGCTTGAAATATGTCTTGTGATTCTGCTTCCTGACTTTAAATGTGGATAGTAAGGTTCACACAATATGGCGGAGTTTACGTGTGCATTGACTTTACTTGAGACAATAAGCTATAattataaagttaggattacaacatgatgtaCAACACTGAGCAGTGCataacagacccacaacaatacaTAGaacataataatgattataggaaacaaaaaaaaagcaaaaacaacctGCAATGacattaacctgaaatacaccattgctaaaCATTAAatgtccatcagcaacttactttatcTTGAAATCCACAATAAAGTGACTTTATTTATGcggtcatttaaggatatatacgATCATCTCACGTGAAATTTgggtttacatgtggaaatggaCATGTTTTTCCCtatgtttctgtcatttttaCGTCATTTACTTGAGTATTTGGGATTGTGGGATTTTTCCTTCTCTGTGGCCGTTTTTTGGGCCACAAACCTGGTTTTGCAGAGATTTTGGGCCAAACGTGTGCACGCATCACCATTTCACAAGTTataaacactgcatgtaaactcccccaATGAAGAtgtgtaaatcaaaataatatatacagtgttgAAAGTTTGTGAACCCTTTAGAATGATCTGAATTCCTGCATTCATTTGACCTAAAATTTGATCTGAGTCCTAATAATGAATAGAAtctgattaaacaaacaaaagaatcaTATTTTTTCAAGTCTTTATTGAACAACAAAGACAGTGGGGATGtgttcaataaaaacatgaaaaagtactGCTTCAATTGATGGCTATGATAtggcacacactcactctcagaTAGTAAAACTAACATTCTGAGACATCGCTAATAATTTACTTATGTGTAAAAGAATTGtgtaaaagaatgaaaacatacacaaacactgactttggtggttttaattttttaatctttttcaaCTGTGTGTACTATTCTTGGGGCTGGGAATTTTTAGAGTATTTTTCTGTCTATCTATtttgaatttataatttatagCCATTTCTCTTTCCCCTGTCTAAACAGAACATTGTTAATAAATCTTTTGTTGATTTCACGTATCTGTCTGTGTCTAATATGCAAAAACTGGAGTTCAAAAGAAGCTGAAGGGGCagtgttaattattttataagctgTTGAGGTCCTAGTCCCTCTAAAACCACTAGCTGGCATAGCGGGTACAACTGTGCCACAAACAACTCTATTTATATGTCATGGCTCTGTCTTTGCTATTTTACTTGATGCCTGGTTTGCTGCCTCATCATTATCTAGTATCTCTCCTGTGGTGTCAATCTGAGTGTGTTTTCTCTTGCACCCTGGTTTGGTGAAGCTCTCCTTGATCTCAACACGCCCATCCTCGTGAACAATCTCTTCTAGGCGAGGACAGTTTAGGGCTTCCCATAGCTTCTGCTTGATTTCCCTGCCCAGCTCCAGGCTGTACGGCCTGGGGTCCCCCGATGACGTGTTGAACATAGGATCCACCACAGAGCGGAAGACTTGCTGATACTCCTCCACACTCAGCCCGTGAATCCAAAGCGGCTCGTCCTCTTGTCTGGGAAGGCTGGAAGTGGAGGCAGCTCTCTCTGCAAGGGCTTTTTCCAGCCGTGGTCTTAGCTCTGGAATGACTGCCGCGTTTTTAATGTAACGTTCCTTCAAACTCTCACTCTTATGCACTGTAAACCCCTCACACACCTGATTACACATAGGATTGTTCCCTATGCCTTTGAGAGTCCCATCTTCAGGGCCCTCTTGAGGTGCAGAAATGCAGATGTCACCGTGCAGCGATGGCTGACAACAGCCCCCCTCCCTTGTCACCCTGTGATCTCCTGCTGGTGGGTAGTGCTTTGGCGCAGAGCTGACATCTTTCTCCTCGGACAGGGACTGGACTTCACAATCTGGGTGTTCATGAGGACTGCAGAGTCCCTGGAACACAGGCTTGGCCATTATTGGTGAGAAGCTTTTGGATTCTGTAAAGATGCttgaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006619 True 4907 mRNA 0.40 19 11965268 11984815

Neighbor

gene id symbol gene type direction distance location
AMCG00006615 NA coding downstream 34109 11907802 ~ 11931159 (-)
AMCG00006611 rerg,LOC107569200 coding downstream 125542 11825901 ~ 11839726 (-)
AMCG00006613 timp3,LOC106609153,LOC100696712 coding downstream 209788 11738219 ~ 11755480 (-)
AMCG00006612 NA coding downstream 345444 11612595 ~ 11619824 (-)
AMCG00006607 fam19a2,LOC103364248,LOC108248567,LOC103023565 coding downstream 413707 11550314 ~ 11551561 (-)
AMCG00006626 NA coding upstream 356932 12341747 ~ 12346094 (-)
AMCG00006627 rpl18a,LOC106593275 coding upstream 365952 12350767 ~ 12354277 (-)
AMCG00006628 rtcb coding upstream 391093 12375908 ~ 12380970 (-)
AMCG00006633 NA coding upstream 402097 12386912 ~ 12392701 (-)
AMCG00006634 nup50,LOC107687567,LOC107601009 coding upstream 448208 12433023 ~ 12444850 (-)
G110957 NA non-coding downstream 63100 11899963 ~ 11902168 (-)
G110942 NA non-coding downstream 168926 11794536 ~ 11796342 (-)
G110940 NA non-coding downstream 171767 11790052 ~ 11793501 (-)
G110939 NA non-coding downstream 176034 11788940 ~ 11789234 (-)
G110917 NA non-coding downstream 292785 11671569 ~ 11672483 (-)
G111158 NA non-coding upstream 774756 12759571 ~ 12760836 (-)
G111182 NA non-coding upstream 969795 12954610 ~ 12959628 (-)
G111389 NA non-coding upstream 2018938 14003753 ~ 14004141 (-)
G111421 NA non-coding upstream 2151513 14136328 ~ 14137746 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding upstream 2183316 14168131 ~ 14214816 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 1857983 10087275 ~ 10107285 (-)
G110605 NA other downstream 2405164 9545495 ~ 9560104 (-)
G110570 LOC106576073 other downstream 2966004 8997637 ~ 8999264 (-)
G110520 bmt2 other downstream 3171206 8783905 ~ 8794062 (-)
G110507 NA other downstream 3240916 8722388 ~ 8724352 (-)
AMCG00006618 crebl2,LOC102781596 other upstream 33054 12017869 ~ 12024549 (-)
AMCG00006621 borcs5 other upstream 64679 12049494 ~ 12069660 (-)
AMCG00006622 lrp6 other upstream 86575 12071390 ~ 12130383 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other upstream 152367 12137182 ~ 12140405 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 891477 12876292 ~ 12878656 (-)

Expression


Co-expression Network