AMCG00006630 (LOC104940688,LOC102079147,LOC106573136,LOC104946814)


Basic Information

Item Value
gene id AMCG00006630
gene name LOC104940688,LOC102079147,LOC106573136,LOC104946814
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12332334 ~ 12333254 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006630
ATGGAGACCACCGCCAACAATTACGGGCTCATATTTGCCTGCACATGCGGAGTGATCTTGGGGATTGGCTTCTGTGCCAACCTGCTGGTGTTCTCGCTGTTTGCCAAGTACAACACCCTACGCAAGAACCGCCTGGACATCCTGCTGCTCAGCATGGCGCTGGCGGACTTCCTCACGCTGCTCCTCATCCCCTTCACCCTGCACTCCGCCATCAGCCACAACTGGCCGATGAGCGACGCCTTCTGCAAGGTCTACCAGTTCTTCCTAGCTTTCTCCCTGGCCGCCAGCACGTATTCCCTTTGCGCCGTCTCTGTAACCAGGGCGATGATCATCACCAACCCACACCGGCCGCCCGAGATGGACCTGGTCATCTTTATGTTCATCCTGGTCTGGGCACTGAGCTTCTTCATCAGTTTCCCTTTGCGGATTTTTGCCACCAAAGAGACGGGAACTGTGGAGAACTTCACCTTTTGCCTGCCCACCATTCACGAGCACCACTACCAGGTGGTCATGGGCCAGTTTGTGCTTTACTACTTCATCCCCATGCTGGTGATTGCCTTCAACTACATCCGCTTGGCCCTCTTCCTCCACAAGAGCCCCATGATGTCCATGGCAAGTGCCAGGAACACCCGTCGAGCCTCCATCATGGTGTTCATGGCGGCCGCCACCTTCTCAGTGTGTTGGCTTCCTGGCTACATGCTGGAGCTGTGCGTCTACCTGGGGCTGTACCGCCACGGCAAGTCCTGGGAGATGTTCTACTTCATCTGCACGGTGCTCCAGTACCTCCACCCTTGCGTCAACCCCGTACTTTATGTGCTTCTGTCCAAGAGGTACCGGCACAAAAGGGGTGGGTGTCTGCTCAACTGCAACCGAAACAAAGTGCATCCGCAGGTCATCAGTGTGACGGAAAGCTTTCGCTAA

Function

NR:

description
PREDICTED: galanin receptor type 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006630 True 921 mRNA 0.56 1 12332334 12333254

Neighbor

gene id symbol gene type direction distance location
AMCG00006629 NA coding upstream 4181 12326835 ~ 12328153 (+)
AMCG00006616 NA coding upstream 278307 12031655 ~ 12054027 (+)
AMCG00006620 NA coding upstream 318013 12013086 ~ 12014321 (+)
AMCG00006617 tbk1 coding upstream 331415 11987460 ~ 12000919 (+)
AMCG00006614 ptpro coding upstream 430288 11883937 ~ 11902046 (+)
AMCG00006623 xpot,LOC102775766 coding downstream 22799 12356053 ~ 12374775 (+)
AMCG00006631 NA coding downstream 48073 12381327 ~ 12387504 (+)
AMCG00006632 kiaa0930,zgc:172139,LOC107562136,LOC107687566,LOC107719873,LOC107699202 coding downstream 91952 12425206 ~ 12431044 (+)
AMCG00006635 NA coding downstream 197086 12530340 ~ 12540008 (+)
AMCG00006639 LOC107562148,LOC107741714,LOC105912408,LOC107687569 coding downstream 284263 12617517 ~ 12618947 (+)
G111008 crebl2,crbl2 non-coding upstream 307785 12022810 ~ 12024549 (+)
G110930 NA non-coding upstream 538799 11793168 ~ 11793535 (+)
G110916 NA non-coding upstream 659886 11671569 ~ 11672448 (+)
G110883 NA non-coding upstream 982217 11349884 ~ 11350117 (+)
G110849 NA non-coding upstream 1211599 11120390 ~ 11120735 (+)
G111063 NA non-coding downstream 17503 12350757 ~ 12353363 (+)
G111148 NA non-coding downstream 426317 12759571 ~ 12770925 (+)
G111161 NA non-coding downstream 512669 12845923 ~ 12847502 (+)
G111240 NA non-coding downstream 1020702 13353956 ~ 13357071 (+)
G111272 hmga2 non-coding downstream 1124785 13458039 ~ 13502571 (+)
AMCG00006624 NA other upstream 9056 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 2764058 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 3608268 8710750 ~ 8724066 (+)
G110445 NA other upstream 4155548 8175760 ~ 8176786 (+)
G110279 NA other upstream 4677140 7653672 ~ 7655194 (+)
AMCG00006636 NA other downstream 286808 12620062 ~ 12651815 (+)
G111197 NA other downstream 677930 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 1600412 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 8604243 20937497 ~ 20944977 (+)
G112567 NA other downstream 8715082 21048336 ~ 21049038 (+)

Expression


Co-expression Network