AMCG00006633


Basic Information

Item Value
gene id AMCG00006633
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12386912 ~ 12392701 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006633
GTGagcaacagatttatttatttttttagggtTGGATGCGGTGCAGTTGACACGTGATTTTTGGTTAATTGTACTAGTTTTTTTCCtcgtttttaattattaatctgtgcgatatttttaaatatacatgcgTATTCGTCTTCTCTAAGGTTGGGCGTTATTTGATCTGTTACCATGATGCTcagttgtgtgtttgcttgttttctgcAGCTGGGGATGTCAGCAAAAACATTCAAAGTTAAGCCAGTAATGGTGTCTCCCAAGCTGACCTGGTTAAACCCCACACAAAACACAGTATCTCTGCAAAAGCCCTTTTGTGTCTTTGACAGTCTGAAACCAAccagtaaaatgaaaattgatgTCTATGTTATCCAGAGTTTGGCAGCTACCAATACCTTTGATACtgggaaaacatacaaagagACGAACGGAGGGAAGGAGATTCCATACAAGGCTACATCTTTCAATGTCCCCAACTGTACTTCTCTCCCAAAACCGGCAGACCTGTCCACCCGCACCAAGGTTGATAAGATTTTAGACCAGTACTTGGTCCAAATTGGAAACGACTCGAACTGTGCAAGAGAGCTAGTGGAAAAGAAAGATTGTAATGGGCCGCTTTCTGTGGACTCCGCATACAGgtttaaatatttgctttttgaCGGAAATGCAACCATAGCAGACACTGAATGGTCAGAGCCAGTGCAAACGGGAAAAGgTCTCAACCCTGATGAAATTGACACGTGGATTGGATACCGAAGTGGAGGTGGGATTGTTGTCACCGTCACTACGagtgtcctgctgttttttctgCTCGTTCTTGCCATTGCCATGGGGGTATTTGAGTCGATCTTCCATGAGAAAATGATAAATGCCACGAGTAGATCACATCTTTCTTCTGCTGTGAAGAAGCGGGggtcagtggaggagactaacATCATGACCTAGAGGTGGGAATGCTCTTTTCTGCTTATGAAgagtgttctgttttttttgggtATTTGACCTTGTGTATGTACAGATGGAGAtatgtcatttgtttatttttattaatcattCATGAATGCCTCGGTTTTGTGAATAAATTAAGTGGGAGGAACCATTTGTCAAGCCATATTGCAAACGTAGCTGAACCTTTCTATGGATGACTAGCAGTTTGGTAATGTTGGCTGGTCATGGAACTTCATCCTGGTAAGTTTAACCCTTAGAAATCCAGTCTGACCGAAATGTCAATTACAGTGGTCTGTAAAATTGGGATAATATATCCTTGCAATGTATGTGACAATATACTTCACACTGGGTTCCTAAGATTTAAGTTTGACTTCAAGTGGAGTAGTTCTGAATCAATATAAGATTTTGAATATTAAGTGGTAGTTCAAATGGTAGAAAGTATGCCCCCACATGGGCAGTGGATGCTTGCTGATCCCTCTATTGACTTGAAAAACAGTGTTCCTGGTGATGAAGTGATCCTGCTTATGCTGATCTTGGGGTTTAAAATAGTTCTGCGGTGGAGGCTTTGGTTGTCTTCACACCCCACCAATTTCTAGATCCTAGCACTTCTTCACAATAGGGGAAAAAATGGTCTCCATCTGAGGTGACTTGAATATCAACCTACGGATCGTATACCATCAGTTCACAAGACCGAAGCCTTGAGTGACCAAGTCTGCTGCTATGGTAAAATAGCACATGATAAAATGTCTGACCTGAGACTTCTGTATAACTAGTGTTGTACTTCTGATTTATAGTCTGTGAGGTTTAATACCTATGAGAGTGAGGAAGGGAAAGGTGTTGAAGCTGCtgtttgattttgatttcatttaagTGGGTAATTGTTTGAATCATTGCTgaacttcttcttcttcaatgtTCATCTTTATAAACCACTGCCTTGTTTCATGGCACCCTTATTGTCATCAAAGTCTTCAACTAGACACTCATTGCAAAATACCCTTGATTTactgtggtttttttttgttttttttttttgggggggggatttgTATTGCACTATTGATATTGGTTCAGTTACtttcttttgtaattaaatggtGGCCATTGCTCAGTACTAAGTCTGAAATGTATTACTGAGTGAAACCTGCCTGTGCCCTTGTGTTCCAAATGTTAAGCTTGCATCTGCATGCAGGTTCTGAGCTACTAAGAATACTGATGAACTATTGTAATCCATTGTCCAATGAGTTCcaacagtttttcattttcttacatCAAGTTCTAAAACCATGTAAAGCATACACAATGAATAGATTTACTGGACTTTGGTCTTAACACAAATTGGTTTAATAAACCCTCTGTTATATAGCAGCATGTATTAGGGgatattttccagaaaaaatTCTCTTAAGAACAAAGGAGATTGCAGTTCTGCTTTTGTGACCACAATCTCAAAAGCAGACCTGTTTCTTGTGTAAGTGAATCACATACACTCAGCCTGCTCTAAAAGCAGTGAATGATCATTTCGGTAACTGTGAGCAGGTTTTAAGACCATGACACATCATTGGACTTGCAAAAGATGAATGTCCACTGCTAAACTAGCTTTACACAAGCAACTGTCTGGAATCCTTTGAGCGGCATAACGTTTACATGAACGAGCTGAACCTGGACAGTTCTGAAATTCAAAAGATGACCTTCTCAAATATAGCAGCATACAGCACCttggcttttgttgttttttttactttctgtaaTGTCCCTGTAATCTTGGTTTGCTTGCATTtgctaaagtttttttttttttttttctattaggCTGTTGTCTCACGCAGCACTCTTGGAGCTGCTGGAGATACACGGCCCCTGCACCAATGATAGCTGCCATTTTGAAATGGTGTGTCTCTCATgcatgtttttgtgattttaaaatgggtttgttgttttgcagataAATACTTGTTTGATGTATTAAAATCCTACACTATGTGGTGCTTTACtccaaaacatacacacaattctTCCTCACCTTTGCTTGCAAAAGGAAGGATGGCTACAAATCCTGAGGTGCTGTAACATACAAGCTGCCCTTCTACTCGGATGTGTCAGGCTGCAGAATACAGATCATAGCCAGATGATACAATGATGTATGCAAATGAGAAGTCATGGCAGGACTGTAAATGCAGTCAGTTGTCCATCTCTAGTGTTGTGGGGAGTAAAGTGTGAATGTCAGTGGTGTGTCATGTCGCAGCTGTCATTAGTTCTCCTATTCTAAATACAGGCATTGTTTTAGTGGTGTGAACTACAATCATCCTGTGCTTCTAAAAAGTTGAGAATGGTTTAGTTAAATGGCTCCTAATGCTCTTGGATCAGATTCAGAACCTTTTAAATGAATCCacactaaagaaaaacagaaagcaaaccaCATTATGAGATGAC

Function

GO: NA

KEGG:

id description
K19520 UPK3A, UPIII; uroplakin-3a

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006633 True 3381 mRNA 0.40 6 12386912 12392701

Neighbor

gene id symbol gene type direction distance location
AMCG00006628 rtcb coding downstream 5942 12375908 ~ 12380970 (-)
AMCG00006627 rpl18a,LOC106593275 coding downstream 32635 12350767 ~ 12354277 (-)
AMCG00006626 NA coding downstream 40818 12341747 ~ 12346094 (-)
AMCG00006619 NA coding downstream 402097 11965268 ~ 11984815 (-)
AMCG00006615 NA coding downstream 455753 11907802 ~ 11931159 (-)
AMCG00006634 nup50,LOC107687567,LOC107601009 coding upstream 40322 12433023 ~ 12444850 (-)
AMCG00006637 arhgap8 coding upstream 155094 12547795 ~ 12561436 (-)
AMCG00006642 LOC103363517,LOC104927640,LOC108425352 coding upstream 373311 12766012 ~ 12801901 (-)
AMCG00006644 NA coding upstream 456306 12849007 ~ 12851784 (-)
AMCG00006643 braf coding upstream 466476 12859177 ~ 12872555 (-)
G110957 NA non-coding downstream 484744 11899963 ~ 11902168 (-)
G110942 NA non-coding downstream 590570 11794536 ~ 11796342 (-)
G110940 NA non-coding downstream 593411 11790052 ~ 11793501 (-)
G110939 NA non-coding downstream 597678 11788940 ~ 11789234 (-)
G110917 NA non-coding downstream 714429 11671569 ~ 11672483 (-)
G111158 NA non-coding upstream 366870 12759571 ~ 12760836 (-)
G111182 NA non-coding upstream 561909 12954610 ~ 12959628 (-)
G111389 NA non-coding upstream 1611052 14003753 ~ 14004141 (-)
G111421 NA non-coding upstream 1743627 14136328 ~ 14137746 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding upstream 1775430 14168131 ~ 14214816 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 246507 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 256529 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 317252 12049494 ~ 12069660 (-)
AMCG00006618 crebl2,LOC102781596 other downstream 362363 12017869 ~ 12024549 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 2279627 10087275 ~ 10107285 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 483591 12876292 ~ 12878656 (-)
AMCG00006663 hmga2 other upstream 1062731 13455432 ~ 13503228 (-)
G111489 NA other upstream 1967527 14360228 ~ 14364422 (-)
G111621 NA other upstream 2319316 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 3360120 15752821 ~ 15753235 (-)

Expression


Co-expression Network