AMCG00006634 (nup50,LOC107687567,LOC107601009)


Basic Information

Item Value
gene id AMCG00006634
gene name nup50,LOC107687567,LOC107601009
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12433023 ~ 12444850 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006634
TACACATCCCGTGGACCCTTGCGGTGGCGGCTTCTGTCAGACATGCGCAGTGCAGCGGCGAGGCGCGCGGTTATTCCGTTTTATAAAATGGCGGCTTGAAAAGGGGCGACTGAGAAATATATACAGGTGAAAAGATAAAGCGAGCGGTAAAAGTGCGGTCATATTTAAAAGACACATTACTCGAGGCGACCATCAGTGACCCGTGGAGTCGACAGGGACAGgaaCAGTTTCAAAGAGCAGCATTGAGGAAAGCACCCCTTTAATTATCTTCACTAACAAACTATTGaagtgttaaaatggcaaagcGAATTGCTGATAAGGAGCTGAATGACCGTAACTGGGATCaggaggaagaaggagaagagGCTGGAACATTCTCCATTGCCAGTCAAGATGTCATCAAAAACAGGGCTATCAAGAAGGCAAAGCGTAGAAATGCTGGAGCTGAGGTAGAAAGCGGCGGAACGTTCAAGGGTTTTAAAGGATTCAGCCTGAGTGGGTCtgcaggagggggaggaggctTCTCAGGCTTTGGGAATGGCTCTGGGTTCAAGCCCCTGTCTGTCCTGACCAATGGAAGCAGCACCTCAACCAGCACATTTTCTGGGTTTGGCACCTCTGACACTCAGACCAAAACGGGCTCATTAACATTCAATGGTCCTGCCCCCTCCCAGCAACAGAGCAGTGATGTCAGTAGACAATCTAACGGTGTGACTCAGTCCAGCTCTGCCCCCAGCTCCTCTCAGAGCAGCAGCCACAGCAGCCGGGAGTACAACAGACAGCTCACCGCTCTCAACTGCTCCGTGCGCGACTGGATCACCAAGCATGTCAACGACAACCCTCTGTGCGACCTCAATCCCATCTTCAAGGATTACGAGAAGCACTTGGCCACCATAGAGCAGAAATACGGGGGCAGCTCTGACAGCGGCTCTGAGAGCGAGGCAAGCGGCAGGCAGGCAAACACGCAGCCAGCCGCTGCACCCGGCAATCCCAGCGCCCCCCCGCAGACGAGCACAGCAGCATTGTTCTCCTTCAGCAAAGACAAGAGCGACGGCGGTGCCCTGGAGAGCAGCGGCGCACCCGCCCCCAGTGCCCCCACCAGCGGCGCCACTTTCAATTTTGGGAAGAAGGTGGACAGCGCCGTGCTGGTCTCTCTACCAACCGGCAGCACACCCAGCTTCTCGTTTTCCAGCCAGGGCTCCAGCTCTTTGTTCGGGAGCCAAGGAACGACTCCAGCCACAACTTTCTCTTTCGGTGGGTCTAAAGCAGAGGGTGGCAGTGAAGATAAAGCAaaagATGAAAAGgttggagagggggaggaatcTGAGGAGCCCCCAAAGCCTGTTATTAACGAAGTCAAGGAGGATGATGCGTTTTATTCAAAAAAgTGTAAACTCTTCTACAAAAAGGACAatgaatttaaagaaaaaggagTTGGGACATTGCATTTGAAACTTGTTGCAGACAACAAGACGCAACTGCTAGTGAGAGCGGATACCAACCTAGGAAACATCCTGCTGAATATTCTGGTGCAGTCTTCAATGCCATGCACAAGAATGGGAAAGAACAATGTTATGGTGGTTTGCGTCCCCAACCCCGCAGTGGATGAGAAAAACCCAAGCGCTCCCGTCCCCTTATTAATCAGAGTAAAAAGTGCAGAAGATGCCGATGAACTGCACAAAATCCTCATGGAGAAGAAGGCGTAACTATTTAGAAGCACAGAGAAATTTGATAAcgctgcttttttttccctccttcttCCAATTTTCCATAATTGTCTAATTTTAGATTGTCGATTTGtgtgaaaagcaatttaatcTGCAGTGGTGGAGCACTGTTTGCGTCGCTGTTTTGTGAAGTCTCGGATGTTTAAACATGTCTTCACATTTGATGTAATTGATTCACAAAGGTTATTGACTTAAAGATgctcccctttttttttttttgcatgcaaATTCTAGAGGTTGAAATGAAATTTGTTTATCATACTGTGAACATCTTAAATCCCCGTTTCTTCTGCCGTGAATCTGGGGTATTCGACGGTCTTGTTCAGACCAAACTCGTCTCGATGGCCTCAAATGTTCCTCATCTTTGAAAGTCATGTATTCTTCATTAAAGGGATGACTGCTGATATACAACTGGTTTAATGAATCAatcgatttaaaaaaagatcagGACAGACCTGGATTAGGATTCAACATTCCAGTGAGAATTTTTTTGCTGCTATCACTGAATTGAGGTAGAAATGGAGAGATACCAGATGTTTGGTTCTGTGGAGCTGATTTctatgaaatgtttaaattcatCACGGCTGCggtacttttcttttttgacagttgtaccaggaaaaaaaaaaccagaacAATGAAAGTCATTGCTTAATACGCTACTGTACAGCTAAGTGTTTTATACTTGCGACAGTATGAAAGTACACTGACTCATGACACCTAAGGCAAGTTTTGTCTCATTCTCATCCGTGGTGACCTTTTCAATTAATGTCATCAAGTGAAATTTCACCTGTAAATAAATTTAGACACCATGTAGACACTTTGCCTTGAATTTTAGGTCTTGTGTAACTTagcaatttaaattactttctcTGAAGTAAGCAATCTCTTCCTTAAATTGAATTGTAGTACAATTACACTTCGAATTAGTGTCAAGAGTTTGTAGTAATCATTTATATGATATCAGTATCTGTTATTAgggtttgacttttttttttttttttttgcaaaacttGAATTTTTAAAGGATAAAGGAATAAAATGTTCAGTGTATTTAAAGgagtacatttaaaagtatttattacagATACAATAACATAGCTAAAGGAATTTTGTCCAGCTGTCTACATATTTTGATGTAAAGTTACCCAGAGTAATTCTGCATTCTTAATGGAGTTACTAGGAAATACGGTATTTCTGTGTTCTGCAAATTGTCTTAATATTCTCGAGGTTTATAGCAGTTGAAAGTCCACACTGTAACATTCAGCTGTTCTGTCCATTGGATTTCTTATGGCAATCAGTGTTTGAAATAGATCTCATTGATTTAGTTCTTTTCAAAGTGACCTTTGTATTGCCTTTGTATAAGTGGCTCACTTTATTTCTACAAAGGTGCCCAATACATTTGTAATCGCTGTTCAAGAAGTGGTTGGTGAATAAACCATGTTACACTTTCTTTTGGTGTTGCTTTCTGTTTCTGGGATTAAAGTTATACAGGGGGGACATTTACATGCTTTGCTGTTTTAACAGGCGTGGGTCTTAAGATATTAAATCATTTCAG

Function

symbol description
nup50 Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular transport; mRNA transport; and protein transport. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Orthologous to human NUP50 (nucleoporin 50).

NR:

description
PREDICTED: nuclear pore complex protein Nup50-like

GO: NA

KEGG:

id description
K14295 NUP50, NPAP60; nuclear pore complex protein Nup50

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006634 True 3285 mRNA 0.43 9 12433023 12444850

Neighbor

gene id symbol gene type direction distance location
AMCG00006633 NA coding downstream 40322 12386912 ~ 12392701 (-)
AMCG00006628 rtcb coding downstream 52053 12375908 ~ 12380970 (-)
AMCG00006627 rpl18a,LOC106593275 coding downstream 78746 12350767 ~ 12354277 (-)
AMCG00006626 NA coding downstream 86929 12341747 ~ 12346094 (-)
AMCG00006619 NA coding downstream 448208 11965268 ~ 11984815 (-)
AMCG00006637 arhgap8 coding upstream 102945 12547795 ~ 12561436 (-)
AMCG00006642 LOC103363517,LOC104927640,LOC108425352 coding upstream 321162 12766012 ~ 12801901 (-)
AMCG00006644 NA coding upstream 404157 12849007 ~ 12851784 (-)
AMCG00006643 braf coding upstream 414327 12859177 ~ 12872555 (-)
AMCG00006647 NA coding upstream 516319 12961169 ~ 12987800 (-)
G110957 NA non-coding downstream 530855 11899963 ~ 11902168 (-)
G110942 NA non-coding downstream 636681 11794536 ~ 11796342 (-)
G110940 NA non-coding downstream 639522 11790052 ~ 11793501 (-)
G110939 NA non-coding downstream 643789 11788940 ~ 11789234 (-)
G110917 NA non-coding downstream 760540 11671569 ~ 11672483 (-)
G111158 NA non-coding upstream 314721 12759571 ~ 12760836 (-)
G111182 NA non-coding upstream 509760 12954610 ~ 12959628 (-)
G111389 NA non-coding upstream 1558903 14003753 ~ 14004141 (-)
G111421 NA non-coding upstream 1691478 14136328 ~ 14137746 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding upstream 1723281 14168131 ~ 14214816 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 292618 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 302640 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 363363 12049494 ~ 12069660 (-)
AMCG00006618 crebl2,LOC102781596 other downstream 408474 12017869 ~ 12024549 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other downstream 2325738 10087275 ~ 10107285 (-)
AMCG00006641 mrps33,LOC106591474 other upstream 431442 12876292 ~ 12878656 (-)
AMCG00006663 hmga2 other upstream 1010582 13455432 ~ 13503228 (-)
G111489 NA other upstream 1915378 14360228 ~ 14364422 (-)
G111621 NA other upstream 2267167 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 3307971 15752821 ~ 15753235 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000133_01377791_01389245 NUP50 coding CI01000133 null 1376950 ~ 1389245 (-)