AMCG00006635


Basic Information

Item Value
gene id AMCG00006635
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12530340 ~ 12540008 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006635
ATGCCCATCAAGGTGCCTCAAGTCAGCTCTCTGCACCGGTTGGCTGGCCAGGCCCCTACAGTGCTACCTCAGGTTAGGCCAAAGACCCTGATCCCGGACAGCCTTCCTCACAGCCCGTGCCAAGAGCAGCTGTCCAGCCAGCAGCAGAGCCTCCAGAAAGCAACGGTGGTCAGCATAAAGAACCCTGGTCCAGCGCTGCCCACCGCCAACAACACGGTCAGCCATATCTCGCTGCCAAATGGCCAGCCCATCCCCCCGGGCCTCTCCGAGCCCCCCAGCGTCTCCACGGCCATCAGTACCGCGGGGGTCGCCTACGCCATCATCTCCACCTCGCCAAGCGGCAACACCTCCGGCAACACCATGTCTGTGGTCAACGAGGCCATCAAGGTGCAACCGCTGCTCATCAGCACAGACAGCAAGGTGATCATAATTCAGCCCCAGGTTCAGTCGGGCCCTCAGAGCCAGCCAGAACCGAAACCAGAGAGCCCCGCCCAGGAGCCGGTCCAAGCACCCCCTCCTCCAGCcaagaagaggagagaggaagaccCTGAGAAAATTGCCTTCATGGTAGCACTGGGCTTGGTTACAACGGAGCACTTGGAAGAAATCCAGAGCAAGCGCCAGGAAAGAAAGAGACGGAGCACGGCCAACCCAGCCTACAGTGGCCTGTTTGAGCCAGAGCGCAAAAGACTTGCATCAAATTACCTGAACCATCCACTCTTCCTGACTGCGAGAGCCAATGAGGACCTGTGTTGGAAGgATGACATTGTGCATGACAAGCACTGTTCGGTGTGCAAGGAAGACGGAGAGCTGCAGCAGTGCCATAGCTGCTCCCGCGCCTATCACCCAGACTGCCTCGATCCCCCACTCAAGACCCCGCCAAAGGGAGTGTGGGTTTGCCCCAAGTGCCACAAGAAGgTAATAAACAAGGACAATATGTCATGGCCCCAGAATCTGACAGTCGTCCAGTCTTatataacacacaaaacagtgaaagaggaggagaagaggaagcTGCTGAAGAGGAGCAGCGAGCTACAGGGCGAACACGCGCAGCTGGAGGACAGGGAACAGCAGCTCAGCGACTCGCTTGCGCAATGTatggatttgaaaaacaacCTGTTGGGCAAGCAGAAGGAAACCCAGTCCTCCTTGGAGCGACTGAAGGCTTTGATCAGACTGATCCAGAGAGACCAGATGATCCAAGTGACTATgactgccaccaccaccaccacagggGCCTCCCTCCTCACCCTGCCCTGGATCAAACCCCCGAGCGCCGCCGCCCCGTCCTCCGCCGGCCCCTCTGCTCACGCGCAGAAAGGTCTGCCCCAAACCCAGGGCAACAACTGA

Function

GO: NA

KEGG:

id description
ko04341 Hedgehog signaling pathway - fly
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006635 True 1353 mRNA 0.58 11 12530340 12540008

Neighbor

gene id symbol gene type direction distance location
AMCG00006632 kiaa0930,zgc:172139,LOC107562136,LOC107687566,LOC107719873,LOC107699202 coding upstream 99296 12425206 ~ 12431044 (+)
AMCG00006631 NA coding upstream 142836 12381327 ~ 12387504 (+)
AMCG00006623 xpot,LOC102775766 coding upstream 155565 12356053 ~ 12374775 (+)
AMCG00006630 LOC104940688,LOC102079147,LOC106573136,LOC104946814 coding upstream 197086 12332334 ~ 12333254 (+)
AMCG00006629 NA coding upstream 202187 12326835 ~ 12328153 (+)
AMCG00006639 LOC107562148,LOC107741714,LOC105912408,LOC107687569 coding downstream 77509 12617517 ~ 12618947 (+)
AMCG00006638 kcna1a,LOC105912431,LOC105913409,LOC108279524,LOC103366871 coding downstream 111931 12651939 ~ 12653420 (+)
AMCG00006640 LOC103371429,LOC103459365,LOC103382520,LOC101068332,LOC100696994 coding downstream 174472 12714480 ~ 12716165 (+)
AMCG00006646 tmem178b,LOC107725619,LOC107694293,LOC107655552,LOC107757211 coding downstream 343768 12883776 ~ 12888236 (+)
AMCG00006645 tmem178b,LOC106576670 coding downstream 398318 12938326 ~ 12954435 (+)
G111063 NA non-coding upstream 176977 12350757 ~ 12353363 (+)
G111008 crebl2,crbl2 non-coding upstream 505791 12022810 ~ 12024549 (+)
G110930 NA non-coding upstream 736805 11793168 ~ 11793535 (+)
G110916 NA non-coding upstream 857892 11671569 ~ 11672448 (+)
G110883 NA non-coding upstream 1180223 11349884 ~ 11350117 (+)
G111148 NA non-coding downstream 219563 12759571 ~ 12770925 (+)
G111161 NA non-coding downstream 305915 12845923 ~ 12847502 (+)
G111240 NA non-coding downstream 813948 13353956 ~ 13357071 (+)
G111272 hmga2 non-coding downstream 918031 13458039 ~ 13502571 (+)
G111420 NA non-coding downstream 1596311 14136319 ~ 14137744 (+)
AMCG00006624 NA other upstream 207062 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 2962064 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 3806274 8710750 ~ 8724066 (+)
G110445 NA other upstream 4353554 8175760 ~ 8176786 (+)
G110279 NA other upstream 4875146 7653672 ~ 7655194 (+)
AMCG00006636 NA other downstream 80054 12620062 ~ 12651815 (+)
G111197 NA other downstream 471176 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 1393658 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 8397489 20937497 ~ 20944977 (+)
G112567 NA other downstream 8508328 21048336 ~ 21049038 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029696 PHF21B coding NC_007115.7 CM002888.2 74828055 ~ 74892355 (-)