AMCG00006636


Basic Information

Item Value
gene id AMCG00006636
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12620062 ~ 12651815 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006636
ATGCATAAACGCCACAGCGCGGAGGAATGGCAGTCGCGCAGGCGTCTCAGAGAGCGCCGCTTCTATCAGCCTTCTAGAGATACAGAAGAGAAGCAATTTCAGCGTAACTGCCATTTCCTCACTTCCTCACACAAAGAGCAGCagcaaaagcagcagcagagagaaGCAATGGTCGAGTCAGCGAGAAAAGCAGGGGGACCGCACTGA
>TU139186
TTTGACCTTGGAGgtgtaaaaatgaataacaatgaATGCACCAGCCAGGCTTTCACTACAGGCTTCAGAAGCAGACCATTCTAGAACTACATGTTCTTGGTGTCAAACTTGTGTATGGACCCTAATCCACTACATGAAGTGAACTGGTTTGAAGCCCACTGTTCTTCACTTTTCATTGTCAACCAACAAGAAAACCAAACCATCTGATTCGGCTGTCAAGACTGGAAACTGAGAAGCCCATACTTGCTGGATTAAGTGAGATGCAACGAAAGTCTGTATATCATACCCACAGCGTGCTAGGAAGAGGCCTTATACAATCCTCAGAAATAATATGAAGACCCTGGCATCACACTAGCtggaacaaaaatcatattGGAAAAAGTGTCTTCTCAGATGGAGGACTGGTGATGCTCTAAGACTACACAGAGACATAATCGTGATCAAGTTTGCAGGATACAGAAGAGAAGCAATTTCAGCGTAACTGCCATTTCCTCACTTCCTCACACAAAGTAAAtccacaaagaaaataatgttttgtgcaAGATAATATGGTTTCTGTTCATGACTAAAGGAGACTTTTCCTGTAACAACATGAAGATGAAAAGCATCCACGTTTGTGTGCAAGGATGAGGTTTCAAAAGCACAAGCCACAAGGGGATATCTGGGGTTCGTCTGCCTTGGAAATACACCAAACTGTATCGTTGCTTATCTTTCAAGATGCATCAACTCATTTGTGaccagaaaagaagaaagaagcagaCCTTAGTGACAACGTTTATGTGAtacatgaaaaattaaatgtgctaTGTGACGTATGTGTAATGTTACACGGCTcttggacacacacacacacaaagatatgTACCTTTATGTTCATTCTGGAAAAAGGTTCATATGCAATAGAAAAAAGCTAAATCTGAACTTTAAgggaaatatttacaatatattctGTACTTAATTTGCATATCATGTGCTATACCAAAACATATTGCATGCTTGGAAACCAGGGCATTCAAACAGGTACAAATTATAATGCTTTTGTTCTGTGTCAGCAGTTTAAAACTGCTCTAATATTGTTTGTCTACCTTGTGGGAACAATTGAGGGTTCACTGACAGATATCAGCTCTAACACTGTTCAACTAGTGAAGTTAAAGttattaaatctatatttttttaagtatcatatatgttttatataaagggATCGGTTAAACTGGTGacttatttttagatttttaatattttgctgtgtgattaagtgtttttattttgcctttataaaaaaagaaatcagtaCAAAAGGGTTAACATACTTTAAAACAGCTTCCTGTTAAcactaaaatattttcttcagcAAAATGTTGGTGCAGAGAAATGCAGTCCATTGACTCACTGTAGGTTTTTGATGAGTTCtatgttgtttgtttagtttgttttttaacaggaTAATGTATCACTGTAATTAAAGGCATCTACCTCAGTGTCCTCATTTCCATATTGAAATCAGCTTTAATGCCTGGTCATGTATGAACAATGTTGTGTTAATATATGAgtgatattttttgttgttattttgttgttgttgttacgtAAACAAACTAGATTGATCTCTTAGAAACATTAAGCTTTCGCAAAAGTTTCACCAAACAATAGCCCTCAAACCGTACATAAATGAAATATAacttatatgcatttatttttacattaaagtgtACATCTTAAAGTTGTACAGGCAAGTATATGGCAGAGCACTAGGAAAATGTATGCTGTATGCAGCATGGTATCAAGATCTGATTAAATGTGTCTCAGTGCATTGCCCCTGATTCACTAATCAGACAGGAATGAACAACACAATGGCAAATGTACAGTGTCAACAAACACAAGGACACACAACAACCTTCATTGTatgtttcaatattttgtcaatattgtgtaattaaatCAAAGCCCTGATTCCTAACATACATTTCTTTGATAAGTGCCACCTTAGTAAGACTTTCTTCACTCttgtgaataaaataagatacatGCTATTAAAACAAAGGTGAagtatacttagattttcaagaTGGATGTAAAACAGTTGACTGATGTTGTCCAAAGAAGTCATATTTGATTTACATATTAGGATTTAGTGGCAACACCTTTTAGGTGAGAAATAATTCAAACTCATGTATACTGTTGGTATTTGATTAAAGGAATATCACTCATGTAATAACATACAGTTTTCTTTCCACAAATTCCATTGTCACTTGCTAAACACTAAATGTTCATGACATTTCACAGCCATTTACAACCAGGGGAAAATGCACATCTGTGTTTTgccattaagaaaacaaataaactccAAATAAACCCCCTGACTAAGAAATTGTAGGAAGAAGAGCAATATTACAGGGTGAATAGTTTTAagtttatacaataaaaaacgTGTGCACTATGCACTGTACGTaagaaatatgcattttatattattgttatatattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006636 False 207 mRNA 0.54 4 12620062 12651815
TU139186 True 2487 lncRNA 0.34 2 12620709 12629968

Neighbor

gene id symbol gene type direction distance location
AMCG00006639 LOC107562148,LOC107741714,LOC105912408,LOC107687569 coding upstream 1115 12617517 ~ 12618947 (+)
AMCG00006635 NA coding upstream 80054 12530340 ~ 12540008 (+)
AMCG00006632 kiaa0930,zgc:172139,LOC107562136,LOC107687566,LOC107719873,LOC107699202 coding upstream 189018 12425206 ~ 12431044 (+)
AMCG00006631 NA coding upstream 232558 12381327 ~ 12387504 (+)
AMCG00006623 xpot,LOC102775766 coding upstream 245287 12356053 ~ 12374775 (+)
AMCG00006638 kcna1a,LOC105912431,LOC105913409,LOC108279524,LOC103366871 coding downstream 124 12651939 ~ 12653420 (+)
AMCG00006640 LOC103371429,LOC103459365,LOC103382520,LOC101068332,LOC100696994 coding downstream 62665 12714480 ~ 12716165 (+)
AMCG00006646 tmem178b,LOC107725619,LOC107694293,LOC107655552,LOC107757211 coding downstream 231961 12883776 ~ 12888236 (+)
AMCG00006645 tmem178b,LOC106576670 coding downstream 286511 12938326 ~ 12954435 (+)
AMCG00006650 mkrn1,LOC107757257,LOC107549191,LOC107694290,LOC107725576 coding downstream 363838 13015653 ~ 13035434 (+)
G111063 NA non-coding upstream 266699 12350757 ~ 12353363 (+)
G111008 crebl2,crbl2 non-coding upstream 595513 12022810 ~ 12024549 (+)
G110930 NA non-coding upstream 826527 11793168 ~ 11793535 (+)
G110916 NA non-coding upstream 947614 11671569 ~ 11672448 (+)
G110883 NA non-coding upstream 1269945 11349884 ~ 11350117 (+)
G111148 NA non-coding downstream 107756 12759571 ~ 12770925 (+)
G111161 NA non-coding downstream 194108 12845923 ~ 12847502 (+)
G111240 NA non-coding downstream 702141 13353956 ~ 13357071 (+)
G111272 hmga2 non-coding downstream 806224 13458039 ~ 13502571 (+)
G111420 NA non-coding downstream 1484504 14136319 ~ 14137744 (+)
AMCG00006624 NA other upstream 296784 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 3051786 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 3895996 8710750 ~ 8724066 (+)
G110445 NA other upstream 4443276 8175760 ~ 8176786 (+)
G110279 NA other upstream 4964868 7653672 ~ 7655194 (+)
G111197 NA other downstream 359369 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 1281851 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 8285682 20937497 ~ 20944977 (+)
G112567 NA other downstream 8396521 21048336 ~ 21049038 (+)
G112600 NA other downstream 8491050 21142865 ~ 21203201 (+)

Expression


Co-expression Network