AMCG00006638 (kcna1a,LOC105912431,LOC105913409,LOC108279524,LOC103366871)


Basic Information

Item Value
gene id AMCG00006638
gene name kcna1a,LOC105912431,LOC105913409,LOC108279524,LOC103366871
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12651939 ~ 12653420 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006638
ATGACAGTTGTGGCAGGAGATAACATGGATGAGACCTCTGCTTTGCCCGGGCACCCTCAAGATAGCTACCCACCCGACCACGATGACCACGAATGCTGCGAGAGGGTGGTCATCAATATAGCCGGGCTGCGCTTTGAGACTCAATTAAAAACACTCGCCCAGTTTCCCAACACATTGCTGGGTAACCCCAAGAAGAGGATGCGGTACTTTGATCCCTTGAGAAATGAGTATTTCTTCGACAGAAACCGTCCCAGTTTCGACGCCATCCTCTATTACTACCAATCGGGAGGCCGGTTGAGGAGACCGGTTAATGTACCTTTGGATATGTTTTCGGAAGAGATCAAGTTTTATGAGCTCGGGGAGGAGGCAATGGAGAAATTTCGTGAGGATGAGGGTTTCATCAGGGAGGAAGAGCGCCCTTTGCCCGAGAAGGAATTTCAACGCCAAATCTGGCTCTTGTTTGAGCACCCGGAGAGCTCTGGACCAGCCAGGGGGATTGCTATTGTGTCTGTCATGGTGATCCTGATTTCgattgtgatattttgtttgGAGACTTTACCAGAACTTAAAGACGACCCTGCAGGGAGGATACACATTGTTGGGAATAGCACCTACTATATCAAACCAAATATCTTCACCGACCCTTTCTTCATTGTGGAGACGCTCTGCATCATCTGGTTCTCCTTTGAGCTGGTAGTTCGTTTTTTCGCCTGTCCCAGCAAAGCAGACTTCTTTAAGAACATTATGAACTTTATTGATATCGTGGCCATCATCCCCTATTTCATCACCCTGGGCACCGAGATGGCAGAAGAGCAAGATGGCAAAGGCGAGCAGAAAGGCGAGCAGGCGACGTCTCTAGCAATCCTCAGGGTAATCCGTCTGGTCAGGGTTTTCAGGATCTTCAAGCTCTCCAGACACTCCAAGGGACTGCAGATCCTGGGGCAGACTCTCAAAGCCAGTATGCGGGAGCTGGGACTGttaattttcttccttttcatcGGTGTCATCTTGTTCTCCAGCGCGGTGTACTTTGCAGAAGCCGAGGAGAAGGAGTCCTACTTCTCCAGCATCCCAGATGCGTTCTGGTGGGCGGTGGTGTCTATGACAACTGTGGGGTATGGGGACATGTATCCTGTGACAATTGGGGGCAAAATCGTGGGGTCCTTGTGTGCCATTGCCGGAGTGCTAACGATTGCATTGCCCGTTCCTGTGATTGTCTCCAACTTTAATTACTTCTATCACAGGGAGACGGAAGGGGAAGAGCAGGCACAGTTGTTGCACGTCAGTAACCCCAACATCGCGTCTGAGACCAACTCCAGCCGCCGCAGCTCGTCAACTGTCAGCAAGTCAGAGTACATGGAAATCGATGAGGATATGAACAACAGCATAGACAATTTTAGAGAGGCAAACCTCAGAACTGGCAACTGCACCGTAGCCAACCAAAACTGTGTGAATAAAAGCAAGCTGCTAACTGATGTTTAG

Function

symbol description
kcna1a Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in several cellular components, including dendrite; main axon; and neuronal cell body. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; hindbrain; opercular flap; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in episodic ataxia type 1. Orthologous to human KCNA1 (potassium voltage-gated channel subfamily A member 1).

NR:

description
potassium voltage-gated channel subfamily A member 1

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006638 True 1482 mRNA 0.50 1 12651939 12653420

Neighbor

gene id symbol gene type direction distance location
AMCG00006639 LOC107562148,LOC107741714,LOC105912408,LOC107687569 coding upstream 32992 12617517 ~ 12618947 (+)
AMCG00006635 NA coding upstream 111931 12530340 ~ 12540008 (+)
AMCG00006632 kiaa0930,zgc:172139,LOC107562136,LOC107687566,LOC107719873,LOC107699202 coding upstream 220895 12425206 ~ 12431044 (+)
AMCG00006631 NA coding upstream 264435 12381327 ~ 12387504 (+)
AMCG00006623 xpot,LOC102775766 coding upstream 277164 12356053 ~ 12374775 (+)
AMCG00006640 LOC103371429,LOC103459365,LOC103382520,LOC101068332,LOC100696994 coding downstream 61060 12714480 ~ 12716165 (+)
AMCG00006646 tmem178b,LOC107725619,LOC107694293,LOC107655552,LOC107757211 coding downstream 230356 12883776 ~ 12888236 (+)
AMCG00006645 tmem178b,LOC106576670 coding downstream 284906 12938326 ~ 12954435 (+)
AMCG00006650 mkrn1,LOC107757257,LOC107549191,LOC107694290,LOC107725576 coding downstream 362233 13015653 ~ 13035434 (+)
AMCG00006653 NA coding downstream 383253 13036673 ~ 13037830 (+)
G111063 NA non-coding upstream 298576 12350757 ~ 12353363 (+)
G111008 crebl2,crbl2 non-coding upstream 627390 12022810 ~ 12024549 (+)
G110930 NA non-coding upstream 858404 11793168 ~ 11793535 (+)
G110916 NA non-coding upstream 979491 11671569 ~ 11672448 (+)
G110883 NA non-coding upstream 1301822 11349884 ~ 11350117 (+)
G111148 NA non-coding downstream 106151 12759571 ~ 12770925 (+)
G111161 NA non-coding downstream 192503 12845923 ~ 12847502 (+)
G111240 NA non-coding downstream 700536 13353956 ~ 13357071 (+)
G111272 hmga2 non-coding downstream 804619 13458039 ~ 13502571 (+)
G111420 NA non-coding downstream 1482899 14136319 ~ 14137744 (+)
AMCG00006636 NA other upstream 124 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 328661 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 3083663 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 3927873 8710750 ~ 8724066 (+)
G110445 NA other upstream 4475153 8175760 ~ 8176786 (+)
G111197 NA other downstream 357764 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 1280246 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 8284077 20937497 ~ 20944977 (+)
G112567 NA other downstream 8394916 21048336 ~ 21049038 (+)
G112600 NA other downstream 8489445 21142865 ~ 21203201 (+)

Expression


Co-expression Network