AMCG00006639 (LOC107562148,LOC107741714,LOC105912408,LOC107687569)


Basic Information

Item Value
gene id AMCG00006639
gene name LOC107562148,LOC107741714,LOC105912408,LOC107687569
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12617517 ~ 12618947 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006639
ATGACAGTGGTGCCCGGAGAAAACCTAGACGAGACTGTGGCACTGACAGCCCTGTCTCAAGATGTGTATGATCCAGACCAAGTGAACCAGGAATGCTGTGAAAGGGTGGTGGTCAACATCTCCGGGCTGCGCTTTGAGACCCAACTCAAAACCCTCGCCCAGTTCCCCAACACCTTATTGGGGGACCCCAGGAAAAGGATGCGCTTCTTTGATCCGCTGAGGAACGAATACTTCTTTGACAGGAATCGCCCTAGCTTTGATGCCATCCTGTATTATTACCAGTCCGGGGGGAGGCTCAGAAGACCCGTTAACGTACCTGTGGACATTTTCATGGAGGAGATTAAATTTTACGAATTGGGGGAGGACGTGATCGAGAATTTCAAGGAGGACGAGGGGTTCATTAAAGAGGAAGAGCGCCCTTTGCCGGACAACGAGTTCCAGCGCCAGGTCTGGCTTCTGTTCGAGTACCCGGAGAGTTCGGGCCCGGCTCGGGGGATCGCTATCGTCTCGGTCTTGGTTATTTTGATATCGATTGTCATCTTCTGCTTGGAGACCCTGCCAGAGTTCAGGGAAGAGAGTCGGTTTTATGATCACTCGGTTGTGAACGGGACTAGCCATATCAAGCCCAATCCGTTCACTGACCCGTTCTTCATCGTGGAGACGCTGTGCATCATCTGGTTCTCCTTTGAGTTGCTGGTGAGGTTCTTCGCCTGCCCGAGCAAGCCAGCgttctttaaaaatatcatGAACACCATCGACATTGTGGCCATTATTCCCTATTTCATCACCTTGGGGATGGAGCTGGCGGAGCACCAGGGCAATGGCCAGCAAGCCATGTCGTTGGCAATATTGAGGGTTATCCGTTTGGTGAGAGTCTTTCGGATTTTCAAGCTCTCCAGACACTCCAAAGGACTGCAGATCTTGGGGAAAACCCTGCAGGCTAGCATGAGGGAACTGGGGCTGTTGATATTCTTCCTGTTCATAGGTGTCATCTTGTTCTCCAGCGCGGTGTATTTCGCCGAGACGGACGACCCCTCCTCTGGCTTCTCCAGCATCCCAGATGCGTTCTGGTGGGCGGTGGTGTCTATGACTACTGTGGGGTATGGGGACATGTGTCCTGTCACAATTGGTGGCAAAATCGTCGGTTCACTCTGTGCCATTGCTGGTGTGCTGACAATCGCGCTACCTGTTCCTGTCATTGTCTCCAATTTTAACTATTTCTACCACAGGGAGACTGAGCATGAGGAGCAGTTTCAGTACACCCATGTAACATGCGGCCAGCAGCCATCCTCATTCGGGGAACTGAAGAGGAGTGAGAGCAAGCCTTCTCTCAGCAAGTCAGACTACCTGGAGGCAGATGATTTGGATGCAATCAAATATAGAAATTGTAGCCCCCATAAGGCATACACGGGAAAGCTTTCTGATGTATGA

Function

NR:

description
PREDICTED: shaker-related potassium channel tsha2-like

GO: NA

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006639 True 1431 mRNA 0.51 1 12617517 12618947

Neighbor

gene id symbol gene type direction distance location
AMCG00006635 NA coding upstream 77509 12530340 ~ 12540008 (+)
AMCG00006632 kiaa0930,zgc:172139,LOC107562136,LOC107687566,LOC107719873,LOC107699202 coding upstream 186473 12425206 ~ 12431044 (+)
AMCG00006631 NA coding upstream 230013 12381327 ~ 12387504 (+)
AMCG00006623 xpot,LOC102775766 coding upstream 242742 12356053 ~ 12374775 (+)
AMCG00006630 LOC104940688,LOC102079147,LOC106573136,LOC104946814 coding upstream 284263 12332334 ~ 12333254 (+)
AMCG00006638 kcna1a,LOC105912431,LOC105913409,LOC108279524,LOC103366871 coding downstream 32992 12651939 ~ 12653420 (+)
AMCG00006640 LOC103371429,LOC103459365,LOC103382520,LOC101068332,LOC100696994 coding downstream 95533 12714480 ~ 12716165 (+)
AMCG00006646 tmem178b,LOC107725619,LOC107694293,LOC107655552,LOC107757211 coding downstream 264829 12883776 ~ 12888236 (+)
AMCG00006645 tmem178b,LOC106576670 coding downstream 319379 12938326 ~ 12954435 (+)
AMCG00006650 mkrn1,LOC107757257,LOC107549191,LOC107694290,LOC107725576 coding downstream 396706 13015653 ~ 13035434 (+)
G111063 NA non-coding upstream 264154 12350757 ~ 12353363 (+)
G111008 crebl2,crbl2 non-coding upstream 592968 12022810 ~ 12024549 (+)
G110930 NA non-coding upstream 823982 11793168 ~ 11793535 (+)
G110916 NA non-coding upstream 945069 11671569 ~ 11672448 (+)
G110883 NA non-coding upstream 1267400 11349884 ~ 11350117 (+)
G111148 NA non-coding downstream 140624 12759571 ~ 12770925 (+)
G111161 NA non-coding downstream 226976 12845923 ~ 12847502 (+)
G111240 NA non-coding downstream 735009 13353956 ~ 13357071 (+)
G111272 hmga2 non-coding downstream 839092 13458039 ~ 13502571 (+)
G111420 NA non-coding downstream 1517372 14136319 ~ 14137744 (+)
AMCG00006624 NA other upstream 294239 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 3049241 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 3893451 8710750 ~ 8724066 (+)
G110445 NA other upstream 4440731 8175760 ~ 8176786 (+)
G110279 NA other upstream 4962323 7653672 ~ 7655194 (+)
AMCG00006636 NA other downstream 1115 12620062 ~ 12651815 (+)
G111197 NA other downstream 392237 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 1314719 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 8318550 20937497 ~ 20944977 (+)
G112567 NA other downstream 8429389 21048336 ~ 21049038 (+)

Expression


Co-expression Network