AMCG00006650 (mkrn1,LOC107757257,LOC107549191,LOC107694290,LOC107725576)


Basic Information

Item Value
gene id AMCG00006650
gene name mkrn1,LOC107757257,LOC107549191,LOC107694290,LOC107725576
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13015653 ~ 13035434 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006650
ATGTCCAGGATGGATTTCACTCCAGCTGAAACCACAGTGATGGGTGTGCGGCCTAACTCAGTCAGGTCTGCACTGACATCCATTGCTGAGAAgAATCTGCCCCTGCGGTCCCCAGGTACTGCACTGCCTCCAAAGCTGACACCGTGGAGCCCGAACACAAGCCTCGACTTCCGGAGATTGCCGATCCGCTCCGAGCGCGGCCAGCCGGAAGATCCGGCTTCAGAGCTTAAGATAAACAGTAATGGCGGAGGCGGCTGCGGCATCTACAGCAGCTCCAGCAATAACAGGAGGCTGGACCAAACACGTCACCTGCAGGTGTTGACTCCTTTTCAAGGTTACTGGCTGAGGTATTTCATGCACGGGGTTTGCAAAGAAGGGAGCAACTGCCGATATTCCCATGATCTCAAACCAGCCATGATTTGTAAATACTTCCAGAAAGGATGCTGCGCTTATGGGGACCGCTGCAGGTATGACCACTCAAAACCACCCAAGCAGGACGAACTGGACGGTCCCAAGCCAATGATGCCACGGACTCTCAACCCCACCTCTGATGGCACCCTTTTTTCCAAGTCCTCTGGGCCCAGTGGTAGGGCTGACCTCCTGGAGCATCCACATAGCTCAGGCGCTGTAGACTGGGTCAACGCTGCAGAGTTTGTGCCAGGGCAGCCATACTGTGGACGGGCTGACTCGGTCCTGGAGGAGGAGCCTGGGCTGGTGATCGAGGAGGAGTACGAGAAGGAGCAGGCGAATAAGGAGTTGAAGAAGCAGCTTTGCCCATATGCGGCAGTCGGGGAGTGCCGATATGGTGTGAATTGCGCCTATCTGCACGGGGACGCCTGCGACATGTGCGGGCTACAGGTCCTCCACCCCTCCGACTCTACCCAGAGATCGCAGCACATCAAAGCTTGTATCGAAGCTCATGAGAAGGACATGGAGATCTCGTTTGCCGTCCAGCGCAGTAAAGACATGATGTGTGGGATCTGCATGGAGGTGGTGTATGAGAAAGCCAACCCTAGCGAGCGGCGGTTTGGCATCCTTTCCAACTGCAACCACTGCTACTGCCTGAAGTGCATCAGAAAGTGGAGGAGCGCCAAGCAGTTTGAGAGCAAGATTATTAAATCCTGCCCTGAATGTCGGATTACATCAAACTTTGTGATCCCCAGTGAATACTGGGTGGAAgacaaggaagaaaaacagaaacttaTCCAGAAATACAAGGATGCTATGAGTGGCAAGCCATGCAGATATTTTGATGAAGGCCGTGGCACCTGCCCCTTCGGGGGGAACTGTTTCTATAAGCATGCTTATCCCGATGGCCGTCTGGAGGAGCCCCAGCCACAGAGACGGCAGCTGGGTTTGGCAGGGAGACACCGGaatCAGAGACGGACACCTCTTTGGGATATCTTTGACGAGCGAGAAAGCACCGACTCCTTCGACAATGAAGATGAAGACGTCGTGACCTTCGAGTTGAGTGAGATGTTGCTCATGCTACTGGCGGCCGGCACTGACGATGAAATCACAGATTCGGAAGACGAGTGGGACTTGTTTCATGAAGAGCTGGACGATTATTACGAGGTTTACCTATagcactgcccccccaccacccccaaaaCCCTGATCCCATCCCAAGTACCCAGTATGGACTGTCTTGTGTGAGTGTTGGACAGTAGCTTCTTTCCCCTGTGTTGTGGCAGTGCCTTTCAGCAGGCCATgaaattaataacttaaaaaaattaaaaatatgaaaatacagacaaaaagcGGGCGGTACAATTAAAACCTTTTCTAGAATCCTGTCCGTTCTGTGAGTCTGTCAGTGtccactttatttaaaaatcacaaaaagaaaCTACAAATGAACATGCTAATAAACCTCCTTAAGTTAATTCATGGGTGTGGGTTTGACTTGTATATCATCTACCCAGGTGTTTTAAAGACTGTGTTTCTGAGGATCTCAATGACAACAATCTACTGGTGATGGTTGTGGAGTTTGTAAGACCCTAAGCTTTATGCAGGACTTGTAGGTTTATTTCCGTCGTGCACTGAGGTGAGGTTGGGTTTACTCAAACATCTCTCCTACACAAATTTCTACGTTTTTAACAGACTTCATTTCCCGATCTACAGTACCGAATGTTGTTGAACACTATTTTCTTGCTTTGAAGTGGGTCCGTTTTGCTGGTGTATGATTTCAAATAGACTGATTCACAATCATTAGCAACACCTGTGGTACCTAATAGCAAGTCCCTGCTCAGAAATGGATTTGAATAGTCACAGTTTGCACTTTGTCTGcagactacagaagcagaaactaTGAATCCGAGTGTTTGTAACCGTATGAAAAAGCATCATTCCACTAAAGACGATTTGTGAACATTGAATTCTTAGGCAAACCAGAAAGAGCCATGCCACAAGAACCTGATGTTTATCTGTGTTTAGTTACAGtataaagtatgtatttatacagtatGTGCAGGTTTTTATGATATAAATCATTCAACATTACTTGAAgattaaagtttattttcatcaaatgATCCCAGGTTTCATTGGATGCCTTTTTCCTGATCGAACTTGAACGCAAAAATTATTTCCTGGGAAAACTCGCAAAGaatttgattaaatgtgttatggtatcttttctttatttaattgaatgtctcttattgtttgttttggtccTGTATATTTTATAGCTCTTCAACGCGTGTGCTCTGGTATTGGCATGAATTGCCATCTGTTTCGGAGAGTGtttgtcaaataaaaacactgttaacAGGTTTGGTTTTGCTCTGGACAGGTATGCAGGTGGGTATAATGTTGTGGGCTTGAGTTTGCTAGTTTGAACTACTTAAATGGTCTTCACTGTGTGTCCACGATTCCCCCAGTACCTTGATGGTGATGGCAATtgtcaaattatatatacatatgctgATTGATTAACTAATATAAAACTGGAATGTTACAATTGAATGCAGATTAAATCAGTgcaatacatttatgtatttaatttgcagCAGTGCTATAGACAACATAACAAAACGCACATAAATAACCTTACTGCAGCGCATGTTCATTTCATCGCAGTGGTGCGAGTCTCCTCAAAGCATTTGGATCGGTGATTTTTCTTGTTGCGAGGCTGTGTTCTCCATCCCCACCCTGTGAACGCTCAGAGTGAATAGTCTGACCTTATTACAGCAGCCATCCCTCTGCTGTTCACCTATAATTTACAACCAAATTTAAACTAGtatatctgtttatatatacttGCATGTGTTCCTTCTGTGTGCTGTTCGCTGGTTTTGAATGGTGTTTGTGTGGTGAGGTTCCACAGAAGAAACCATATCTGTGACCTGTTTAATGACTTAAATACTTTTGTTCCTTTTTCCTAGACAAGAAACAAATGAAGGTTCTTATAGATATGCAGGCTATGATGTGGTTTCAGATTTATTATAATGAAGCCCAAACCCTGGGACTATACACCCTTCTCATTCCccctaaataataaataaataaagacttgttcATAATGTACACTTGCATTTTCTTTGCTAGATCTTagttgtgctgtattgtgtatacattaatatgtagaatatatacatacatacagattaTAAAAATGACCAAATTGGGGATATGTAGAATGTAGGTATTGTGAAACTAAATGGTTGAG

Function

symbol description
mkrn1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Is expressed in several structures, including brain; eye; gonad; integument; and liver. Human ortholog(s) of this gene implicated in central precocious puberty 2. Orthologous to several human genes including MKRN1 (makorin ring finger protein 1).

NR:

description
probable E3 ubiquitin-protein ligase makorin-1

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K15687 MKRN; E3 ubiquitin-protein ligase makorin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006650 True 3673 mRNA 0.44 10 13015653 13035434

Neighbor

gene id symbol gene type direction distance location
AMCG00006645 tmem178b,LOC106576670 coding upstream 61218 12938326 ~ 12954435 (+)
AMCG00006646 tmem178b,LOC107725619,LOC107694293,LOC107655552,LOC107757211 coding upstream 127417 12883776 ~ 12888236 (+)
AMCG00006640 LOC103371429,LOC103459365,LOC103382520,LOC101068332,LOC100696994 coding upstream 299488 12714480 ~ 12716165 (+)
AMCG00006638 kcna1a,LOC105912431,LOC105913409,LOC108279524,LOC103366871 coding upstream 362233 12651939 ~ 12653420 (+)
AMCG00006639 LOC107562148,LOC107741714,LOC105912408,LOC107687569 coding upstream 396706 12617517 ~ 12618947 (+)
AMCG00006653 NA coding downstream 1239 13036673 ~ 13037830 (+)
AMCG00006659 NA coding downstream 237063 13272497 ~ 13283101 (+)
AMCG00006656 LMO3,lmo3 coding downstream 247720 13283154 ~ 13324717 (+)
AMCG00006655 NA coding downstream 329165 13364599 ~ 13379831 (+)
AMCG00006665 LOC107594874 coding downstream 544159 13579593 ~ 13592716 (+)
G111161 NA non-coding upstream 168151 12845923 ~ 12847502 (+)
G111148 NA non-coding upstream 244728 12759571 ~ 12770925 (+)
G111063 NA non-coding upstream 662290 12350757 ~ 12353363 (+)
G111008 crebl2,crbl2 non-coding upstream 991104 12022810 ~ 12024549 (+)
G110930 NA non-coding upstream 1222118 11793168 ~ 11793535 (+)
G111240 NA non-coding downstream 318522 13353956 ~ 13357071 (+)
G111272 hmga2 non-coding downstream 422605 13458039 ~ 13502571 (+)
G111420 NA non-coding downstream 1100885 14136319 ~ 14137744 (+)
G111443 NA non-coding downstream 1276318 14311752 ~ 14312024 (+)
G111531 NA non-coding downstream 1593292 14628726 ~ 14632980 (+)
AMCG00006636 NA other upstream 363838 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 692375 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 3447377 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 4291587 8710750 ~ 8724066 (+)
G110445 NA other upstream 4838867 8175760 ~ 8176786 (+)
AMCG00006672 NA other downstream 898232 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 7902063 20937497 ~ 20944977 (+)
G112567 NA other downstream 8012902 21048336 ~ 21049038 (+)
G112600 NA other downstream 8107431 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 8229819 21265253 ~ 21304878 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location