AMCG00006654


Basic Information

Item Value
gene id AMCG00006654
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13087455 ~ 13141147 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006654
ATGAGTGCTGATCTGAAGCTGGGGGGGAGCGGCGGCATGGTGCAGGAGCAGAGAGGCCGCTGGGAAAGGAAGAGAAACCGCACGGCCCGCGAACTGGTGGAGACGGAGCAGAAGTACTGCGAACGCCTCGAACTCGTCACCACGtatttTGTTGAGATTTTGAAAGCCAAGGGAACCCTGAGGCAGGACATAAGAGAGAGTATCTTCAGCTCAATTAAATCCATTCATTCAGTAAACCAGACATTGCTGGCTCACGTGGAAGATGGGAAATTTGGATTGGGCTTCGAAATGTTCTGCCCTCACCTGCATTTTTATACTACCTATGTGGACAACATTGAGAAGGCTTCCAGAGTTCTCCAGgtgcaagtgaagaaaaacaagactttTGCACGTTTCAAGAAGCTTCAGGAATCCAGGCCTGAATTCCGAGGTTTACAGCTGGAAGCTCTGCTCACCCTGCCTTTAAAGCGCATTCATCAGTACAAGCATTTTTTACGGGATctaacagaaaacacaaatcctGATGACCCAGAGTTTCAGCAGCTTACAAGGGCAGTGAGAGCAGTCTCGGAGGTGTCTCAGCATATTCAGGACAATGCTCGAAGTCATGAAAACCACCTGCAGATGATCCGGGTGCAGAAATTGCTGAAAGGACGGAAGACCAAGGTGTTGGCTTCAGGAAGATGGTACATCCGGGAAGGCTGGCTCAGTGCCGTGCCCCTCAAGGGCGAGGAGGCCAAGCGCAAGATGTTCTTCTTGTTCTCGGACATCCTTCTGATGACCAAGCCATGCCACCCACTCCACCCCAATAACTCGGACAAATTTGCCCCTCAGTCCATGTACCCTCTGCGAGAGTGCACTGTCGACAAAGTGTTTGGCCACACGAAGAGCCAGGGAGGCCTAATAAGTTTAACCTTCGAACAAGACAAACTTCTGCTGATGTCGAGTGACCAAGAGGACATTAATGACTGGTACCGGAGCCTGTCGTCTGCCATCGGACAGTTGAAATCCAGGAGCACGGTGGTCTACCGAAACGACAACCTTTGTCGCAAACCTCTGCGATCAACCGAAGATGAGTTCGCTAAGAACAGAGAAGCCAAACACCCATATGGACGGAAGAGGAACATTGTCgaaggagagaaaagagaaCAGGCCACGAACCCCAACTCCCCACTCTCCTTTCCTGAGAGCGAAGGCACAGCATCAAAGAGAATGAAGCTGGCAGATAATCCCACCGAAAGCCCTGCGGTGCCCAGTGTGCTTGAGAGATACAACAATGCCCTGGGCACCCCTCTAAATTCCTCAATAGCCTGA

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG:

id description
K23798 ARHGEF39; Rho guanine nucleotide exchange factor 39

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006654 True 1314 mRNA 0.51 11 13087455 13141147

Neighbor

gene id symbol gene type direction distance location
AMCG00006652 rergl,rergla,LOC107560713,LOC107757225,LOC107594299 coding downstream 25527 13056888 ~ 13061928 (-)
AMCG00006651 NA coding downstream 38135 13041100 ~ 13049320 (-)
AMCG00006648 NA coding downstream 63433 12998449 ~ 13024022 (-)
AMCG00006649 NA coding downstream 96074 12990803 ~ 12991381 (-)
AMCG00006647 NA coding downstream 99655 12961169 ~ 12987800 (-)
AMCG00006658 NA coding upstream 212537 13353684 ~ 13357478 (-)
AMCG00006657 dera,LOC107725660,LOC107655558,LOC107587132,LOC107694244,LOC107757227,LOC107594694 coding upstream 251758 13392905 ~ 13405015 (-)
AMCG00006660 NA coding upstream 273592 13414739 ~ 13417932 (-)
AMCG00006661 NA coding upstream 388228 13529375 ~ 13532102 (-)
AMCG00006664 NA coding upstream 398451 13539598 ~ 13550291 (-)
G111182 NA non-coding downstream 127827 12954610 ~ 12959628 (-)
G111158 NA non-coding downstream 326619 12759571 ~ 12760836 (-)
G110957 NA non-coding downstream 1185287 11899963 ~ 11902168 (-)
G110942 NA non-coding downstream 1291113 11794536 ~ 11796342 (-)
G110940 NA non-coding downstream 1293954 11790052 ~ 11793501 (-)
G111389 NA non-coding upstream 862606 14003753 ~ 14004141 (-)
G111421 NA non-coding upstream 995181 14136328 ~ 14137746 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding upstream 1026984 14168131 ~ 14214816 (-)
G111451 NA non-coding upstream 1041634 14182781 ~ 14299856 (-)
G111466 slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682 non-coding upstream 1103455 14244602 ~ 14246174 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 208799 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 947050 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 957072 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 1017795 12049494 ~ 12069660 (-)
AMCG00006618 crebl2,LOC102781596 other downstream 1062906 12017869 ~ 12024549 (-)
AMCG00006663 hmga2 other upstream 314285 13455432 ~ 13503228 (-)
G111489 NA other upstream 1219081 14360228 ~ 14364422 (-)
G111621 NA other upstream 1570870 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 2611674 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 2739983 15881130 ~ 15896869 (-)

Expression


Co-expression Network