AMCG00006662 (LOC106576661)


Basic Information

Item Value
gene id AMCG00006662
gene name LOC106576661
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13560457 ~ 13573463 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006662
AAAGCCGCAGGTAGGCAGCAGTTCAACATGCCCCCAGCAGACAGACGGGCGGGCTGGCGACTCCGCTGAACTGGGTTACTGTCTGGGTCTGCTCCGGTTACGTCACTTCCCCCCAGAGCCCTGTGTGAGCGTCGAGCAAAGATGGCGACTACACAGCTAACGGATGAGGAGCTTTTCTCGGAGTTGAAGCGATTCGGCTTCACCCCGGGCCCTGTGACGGAGAGCACCCGGCCCGTGTATGTGAAAAAGCTGAAGAAGCTGCGCGacgagcagcagcagcagcggggGACCCGGTCCGGCAAGACGCGCAACAGCGGCGGCATCAACAacagcggcggcggcggcggcacaGCGGCGGCGGGAGCTTCGGGACTCGGAGCCGGGCCAGCCAGCAGTGACGTCACGTACCTGAGCCCCAGCAGCAGCCGGAGCCCCGGCGGCCGCCCGGCTCTCAACGAGAAGCGCTCGGCCGGAGCGGGCAAGCTGGTGCTGGGCTTCAGCTCGGATGAGTCGGACGTGGAGGTCTCGCAGAAAAAATCAGGCCTGCAGCACAGCGGCAGGAGAGACCCAGCCTCTGGCTATCATCATCACCAGCAGCAGGAACCGCAGCAGTTCAGGCCTACACCCACCTCTATCGGCAGGAGTCACCGAGTCGGCGTGAGTAGCAACCCGGCAAGTGCCACCTTAGGGCTGCTGGGCGGCCCGGGAGCGCTCTGGTGGGGGGACAAGGGGAAATCGAGCCTCGGGGTCTCGCACCTCCTGGAGAGCGACCGCAGGGGTTACGGGCAGCCGGACGACGAGGAGGATTACGGCGAGGAGCCGGAGAGGGGCACCAAGGCGCTGAATGGGAGCAGGGCGGTTAATATCTACAAAAGCGGCAAGCCCGGGGGGAACTACTCCGACTCGGACGAGGAGGAGGGCGCAGAGGGGCACCGCGATCGCCGAGCGGGCTCCAGACGAAGCCAGTCTAAACCACTGCCGTCTCCTCGTAAAAGTGCCAGGGGAGGGGAGGGCGGCCGGGAGAGGACGGGAGGCggcataatcataataaatgacAAGCTTGCCGCTGGGAGTCTAGACAtggtgggagagaggggggaggaggaagagcaggaggaggaagagcgcaggaggaggagaggccGGGGGGAGTCGGGGCTGGTAGGCGGCTTGAAGAGTCGAAGCTACTCCAGGAGATCCGGGTTCGTGTCCGGCATCATGGGGGGCAGCGGCGCCGAGGGCAGCCACACCGGCAGCCCCATCGCCTCCAACAACCACCACCATGTCAACAGCAGCGACGGCAGCAGCGGCCGGTTCAGCATCGGGACAAAGACCCGCTACTCGTCTTACAACAGCGCCGCGGCAGCCAGCCCTGCCCGGGCCAACCACTCGAACCACACCGGCTCCAACCATGCCTACAGCAAGACCACGAAGCAGAAGCTGGCGGTGCCCGAGGAGGAGCTGCTCCAGCAGTTTAAACGGGAGGAGGTGTCGGCGACCGGCGGCTTCAGCGCCCATTACCTGTCCATGTTCCTCCTCACCGCCGCCTGTCTGTTTTTCCTCCTGCTGGGGCTGATGTACCTCCGCATGAGGGGGTCCGGGGCTCCCGAGGTGGACGTTGTTAtTAAGAACCATCCTTTTGGGGTTGAATTTGATCATGCTTATGAAGACAGTGAAAAATCAACAATTCTGAAAATTTTGCTTCACCTCCATGATCACCTGGCCAAAATTGCTGggGAACATGACTGTGGTGATCATATCCATCGTGAAAACAGAAGTCTTTCTCTCAGTGAAGCATCTGAGTATTTAATACTTTACAATCCAGAGTATAAGCAGAAGGTTACCACTGCACTTGAATGGATCCTCAAAAGTGAAGATGATGTAGGAATAAggttGATTGGCAGTGATCCTGAGGACAAAGTAATAAACGTTGCACAAATCCAGTACCTGGAGTCCACTCATCCCAACATGTCCTTTATCTGCCGCTTTCGACGTGCGTTTCTCACAGTCATCCACAGGGTTCTGATTTTTATCGTAGGCATTGGTATTGTGTGGGGTGTGCTGTATTACATGAAATATCGCTGGAGgaaagaggaagaagaaacCAGGCAGATGTATGATATGGTTGAAAAGATCATAGATGTCTTAAGAAGCCATAATGAAGCTTGCCAGGAAAACAAAGACTTGCAGGCATACCTGCCCATTCCCCACGTGCGTGACTCACTGGTTCAGCCACAGAACAGGaagaaaatgagaaatgtgTGGGAGAGAGCTGTGAATTTCCTGGCCACAAACGAATCCCGAATTCGAACTGAAACTCAAAGAATTGGAGGAGCGGACTTCCTTGTCTGGAGGTGGACTCAGCCATCCTCAACATGCGATAAAATCTCTATCATGCCGTCCAAAGTGTGGCAGGGCAAAgCTTTCCCACTTGACAGGAGAAACTCTCCACCCAACAGTTTAACACCTTGTTTGAAGATTCGCAACATGTTTGATCCAGTAATGGAAGTTGGAGAGAACTGGGATTTGGCCATTCACGAAGCCATCCTGGAGAAGTGCAGCGACAATGACGGGATTGTTCACATCGCGGTGGACAAGAACTCGCGTGAGggctgtgtgtatgtgaaatGCCTGTCTGCAGAGCATTCTGGAAAAGCTTTCAAGGCATTGCACGGTTCTTGGTTTGATGGAAAACTGGTGACTGTCAAATACCTTCGACTCGATCGATACCACCAACGATTTCCCCAGGCCTTTGGCTGCAACACTCCCCTGAAGCCCTCCAGCAAACACATGAACACAATGTCACACCTGCGGCACCGGACCAGCACAGCCAACTCCCTGGGCTTCTCCTGAGTGTGCCGACTGCTGTCTGGACTGTTCTCACAGCACAAGAGGGCTCTGGTGCAGATGCTgtcttcctctctttttttttttttttttatgtatacattttgtgtattaaacagacgtcttggggggggggggcatcatCAGAAACTCATCTGAGTGCTCCTCGGTCACCGGATTGGATGGCagtttaagatttattaaaacaaacggGGAAAAACGTCAAGACCTCTAAAGTGACCATGAGAATGAGCAGTTACATAGGAGCTTTGCAAGAAGGAACTGGATTTAATTTCTAGATGCCTACAatggatgtattttttttttttgtgaagacTAACAAGAAAACAAGGCTTCCAATTgtaattgcacatttaaaaatttTAATGACCCTCAATACAGTTagcattttttctctttttccctcCTGTCTGTTCTTTTAAACTGGCCCTAGACCCTACTTTAAAAGTTTAGTCAGCCTGTATGTTGAGTAGCTGCATGTGCTGGTTAAAGTATGTCCCTATTTAAGCTTTAAATTGTATCATAATGTggatgtttatttcatacagatgTTTGGGGTTATGTAATCCCGCTCGTAGTTTTAGTGAGAAAAAGGCATGCACAAACACTTAGACAGGGGTGctgtaaatacatgtaaatggtGGTGGCAGTAGCTTATCGTTGAATCGTCTGTATAAAAGCAAATCATAAGCTTTCTTGTCTTATTACCTATcagaaaatagtatttttatttttgactgcATCTGCATTCAGAGGTCAaggaaatcaatatatataagTAACAGTTTTATGTTGGGTTTGCATTCAGGGCCATGTTTCCTGTATGTAAAAGGGTTTCTACACAGTGGATATTTCGCGATGCAGAATTGAGATAAGAGCAATAATTCGAATGGTTCGTCGGCCACAGAGGCTTGTGGGCTTGCATGCCATTCTTTCATTCACTGCCATATAAAGCCACAGGAATCTCCTCGTCCCCTCCATTTATATCCAGATGACCATTTTCAGCGTATATATGTACTATAATTTTATCTAATTTTTAAATCCTCAATATAAATGCTGCAGATctgtgtaatgtaatgctttgttCTTGTAGTCTGATACTTCTGTAACTGAACATTTGCACATCTTATGCAGAACTTGGGGCTTATGGACATTTGCAAAAAATACTTTAGTGAGTTAATCAAACCACCTGCAAATCGCTGGTCGTGGGTTTCCTTTGGTTCAACCCAAGCACTAGAAATCTATCAATTGCTCAGATTTGAATTTTTGTATTGGCAGGTCAGTTGGAATGACTTAATCTCAGCCATTTGAATTTTACTGCCCATCACTTTATTTTTCCCTATTCAATTTCTGGATGAATCTGAATAGTTgccatttatttccattattgAATAAGTGATCAGCAGGACTTGATTTAATGTAAGTTAATGACCCAAACTGACTGCTAAAGTGGATAAAGAACTGAtagtcctttttttatttttgttggatgTGTTATGTTTAGATGGTAAATAAGTCACCATTATATTGTATGACATCCAACATCTCTCATAAACCTAGACCATTTGACATTTAGTATTCCTTGGCCTGAAAAgtgtgaaaacattgtttacaattttttttgaCATGATGACAAAGATAAATAGGCAAAATAAGctggttttagtatttttaaaagtacttttcCTAATTTAAAGGGTTTTCCATTTTGGAATTTATAAACCTCACTTGTAATACACTACAAGGAGGTTTCTGAAAAGAGGGGTATATATATTCATCAAATAAGCTTAGGTTCACTGAATGGTCACCTTTTTGAACATGCAGTGTAGTTAATTCTGGGTGCAGTATTTGCAGCACGAAGTTGTACAGGCAAcgcacattttaaatgtaagaaacCTGATGCACACTCCCCACAGCAGAGAACCTAATTGTGCCTTaactttgtgcttttttttattaatggcaCTGCATTTTCTTGAGAATGTATTTGGGTTTATAAAGTGTTGGAAGGTAAAACTTTTAATCTGTCATTAATTGCACAGAgctaatatgtaaaataattcaacaaggagttttgctgtattttgtgtgcATCATggtaatgtttatatttttatatgtttcaGTCTGACTTTGGTGCACCTGAATTTTTTTATGACCTGTTGCAAGAGTGAATGTAAAAGTTGATGTGGCATTTTTCCAAGGTGGCGCTTGATATTAGCTGCatccttacattttttttgatgtattttatgtaaacactgtacatttatataattgtaatatgtaCTATTATGCAgcttattttccattaaaaatactgttaagTTGACCAATATCCCTACCTGCAAGACAGATGGGAAGGTGTATAATatccagacatttaaaaaaacaaaaaaagttcagatgttttaatgtaatttgtcacTTGTCTTGTAAAAACAACTCTAATTAAAGGTTTATTAGGGGTTTTTAATAGTGAGTCATATGTTTAGACATGTTAAGGAGAAAAGCACTACCTCAAGCCAATGCTGGAGAAATTTGTTCCATACACATGGTTTtacattactgtatatatttagtacCATAAAGCTTCAAATTCAGAATGAAGAAGAGGGTTGATTTAGAAAGCTAAtgactgggaaaaaaaaaaaacctgatgtaaaacttgttttgaaagattacttaatttaaaaatgataattagCTTTATGTGTCCTGCCAATTTGTCACAAATTACTAAAATATTAGAAACAATGAAAACTGTCccttctgtattttaataacacaaattaCTGACTGGTATGCTCCGATAAGTGCTGCATTACTTGGATAATTTAGGATCAGATAATGTACAAATACTTAAGTAGCACTCATTGAGTTTTGTAAAGCAGTAATCTATTAAAAAGGGGGAAGTATTTCGGCcacatatatgcatacattgtTTTGCTACACgcataaagatgtatttattttcaactgcACAAAATACTGTCAGTTAAACCTTACTATTGCTTGTGCACACACCTCTCTGAAACGTGCATTCACGTGTTTTTAATTCATCCGGGGATTGTACGCTTTCCAACACCcatttgaaatgaatgtttCATCCTCTGATAAAATGCAGAAGACAAAGGCTCTATGTGTAATGCAAGTTGAACCCCTTTGACATGCGTTTCCTAAATTCTTGTGACATTATTACATAAATCCGTGTGCGGCAACATAACTTGCTCGGTTCCCAGCCCGCTGCCGATCCTGCTCTTGCTCATATTTGGAGATGGCTTGTGCACAGGAATTTCCCACAATGCCTCAGTCCCGACCTGAGAAGCGCACAGTGGCgttgctttttttcttcctcgACGCTGTCAGGAAATGAGCCGCCGCGGAGCCGGGCATCCTAATCCATATTTCATTAGGCTCTGCTCAGTCCTTTTATCTGCGCACCTTGTCGCAGGTAGGTACGGCC

Function

NR:

description
PREDICTED: inner nuclear membrane protein Man1-like, partial

GO: NA

KEGG:

id description
K19410 LEMD3; inner nuclear membrane protein Man1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006662 True 6334 mRNA 0.45 13 13560457 13573463

Neighbor

gene id symbol gene type direction distance location
AMCG00006664 NA coding downstream 10166 13539598 ~ 13550291 (-)
AMCG00006661 NA coding downstream 28355 13529375 ~ 13532102 (-)
AMCG00006660 NA coding downstream 142525 13414739 ~ 13417932 (-)
AMCG00006657 dera,LOC107725660,LOC107655558,LOC107587132,LOC107694244,LOC107757227,LOC107594694 coding downstream 155442 13392905 ~ 13405015 (-)
AMCG00006658 NA coding downstream 202979 13353684 ~ 13357478 (-)
AMCG00006669 tmbim4,LOC107757272,LOC107587136,LOC107567270,LOC107694279 coding upstream 36810 13610273 ~ 13616189 (-)
AMCG00006670 grip1 coding upstream 95295 13668758 ~ 13726429 (-)
AMCG00006673 NA coding upstream 384018 13957481 ~ 13963850 (-)
AMCG00006677 NA coding upstream 527959 14101422 ~ 14103070 (-)
AMCG00006675 NA coding upstream 546975 14120438 ~ 14123758 (-)
G111182 NA non-coding downstream 600829 12954610 ~ 12959628 (-)
G111158 NA non-coding downstream 799621 12759571 ~ 12760836 (-)
G110957 NA non-coding downstream 1658289 11899963 ~ 11902168 (-)
G110942 NA non-coding downstream 1764115 11794536 ~ 11796342 (-)
G110940 NA non-coding downstream 1766956 11790052 ~ 11793501 (-)
G111389 NA non-coding upstream 430290 14003753 ~ 14004141 (-)
G111421 NA non-coding upstream 562865 14136328 ~ 14137746 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding upstream 594668 14168131 ~ 14214816 (-)
G111451 NA non-coding upstream 609318 14182781 ~ 14299856 (-)
G111466 slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682 non-coding upstream 671139 14244602 ~ 14246174 (-)
AMCG00006663 hmga2 other downstream 57229 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 681801 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 1420052 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 1430074 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 1490797 12049494 ~ 12069660 (-)
G111489 NA other upstream 786765 14360228 ~ 14364422 (-)
G111621 NA other upstream 1138554 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 2179358 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 2307667 15881130 ~ 15896869 (-)
G112059 NA other upstream 4059428 17632891 ~ 17633445 (-)

Expression


Co-expression Network