AMCG00006664


Basic Information

Item Value
gene id AMCG00006664
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13539598 ~ 13550291 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006664
CTGCAAAGCCCTGTTGCCTCAGGTTATCTTGGTGGAAATACTGCAGTGATGTCCGCATTCAATCTGCTGCACCTGGTGACTAAGAGCCAGCCTGTGGCCCTGCGGCCCTGTGGCCTCCCCTCAGggtCATGTAGGGACAAAAAAAGCTGTAAGGTGGTCTTCTCACAGCAGGAGCTGCGGAAACGTCTGACACCGCTGCAATACCATGTTACTCAGGAGAAAGGCACTGAGAGTGCTTTCAAAGGAGAATTCACCAATCACAAAGAAGAGGGAACTTACACATGTGTTGTCTGTGGGACTCCCGTGTTCAAATCAGAAACTAAATTTGACTCTGGATCAGttcctTAA

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030091 protein repair biological_process
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function

KEGG:

id description
K07305 msrB; peptide-methionine (R)-S-oxide reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006664 True 348 mRNA 0.50 5 13539598 13550291

Neighbor

gene id symbol gene type direction distance location
AMCG00006661 NA coding downstream 7496 13529375 ~ 13532102 (-)
AMCG00006660 NA coding downstream 121666 13414739 ~ 13417932 (-)
AMCG00006657 dera,LOC107725660,LOC107655558,LOC107587132,LOC107694244,LOC107757227,LOC107594694 coding downstream 134583 13392905 ~ 13405015 (-)
AMCG00006658 NA coding downstream 182120 13353684 ~ 13357478 (-)
AMCG00006654 NA coding downstream 398451 13087455 ~ 13141147 (-)
AMCG00006662 LOC106576661 coding upstream 10166 13560457 ~ 13573463 (-)
AMCG00006669 tmbim4,LOC107757272,LOC107587136,LOC107567270,LOC107694279 coding upstream 59982 13610273 ~ 13616189 (-)
AMCG00006670 grip1 coding upstream 118467 13668758 ~ 13726429 (-)
AMCG00006673 NA coding upstream 407190 13957481 ~ 13963850 (-)
AMCG00006677 NA coding upstream 551131 14101422 ~ 14103070 (-)
G111182 NA non-coding downstream 579970 12954610 ~ 12959628 (-)
G111158 NA non-coding downstream 778762 12759571 ~ 12760836 (-)
G110957 NA non-coding downstream 1637430 11899963 ~ 11902168 (-)
G110942 NA non-coding downstream 1743256 11794536 ~ 11796342 (-)
G110940 NA non-coding downstream 1746097 11790052 ~ 11793501 (-)
G111389 NA non-coding upstream 453462 14003753 ~ 14004141 (-)
G111421 NA non-coding upstream 586037 14136328 ~ 14137746 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding upstream 617840 14168131 ~ 14214816 (-)
G111451 NA non-coding upstream 632490 14182781 ~ 14299856 (-)
G111466 slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682 non-coding upstream 694311 14244602 ~ 14246174 (-)
AMCG00006663 hmga2 other downstream 36370 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 660942 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 1399193 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 1409215 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 1469938 12049494 ~ 12069660 (-)
G111489 NA other upstream 809937 14360228 ~ 14364422 (-)
G111621 NA other upstream 1161726 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 2202530 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 2330839 15881130 ~ 15896869 (-)
G112059 NA other upstream 4082600 17632891 ~ 17633445 (-)

Expression


Co-expression Network