AMCG00006668


Basic Information

Item Value
gene id AMCG00006668
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13622994 ~ 13634454 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006668
ATGGCCGCCAGAGCCGCCTGTCTGAGCTCCTCGACGCCGCTCTTCGACGCTCCTCCCGCCGTCATGGAGAGGCTCTGTAAACTTATCGACTGTGGGGACGGGGACGTGGGCTGGAGGGGGCTCGCGGAGCGCATACTGCCGGACTGGCTGGAGGTGCGCTGCATGGAGAGAGTGGGGGCGCTGGGGAAGAGCCCCACCCGGGAGCTGCTGTGGAGCTGGGCTCAGAAGAACAAGACGGTGGGGGATCTGCTGGAGGTCCTGCAGGACATGGGTCACCAGAGAGCAATGCAGTTATTCATGCCCCAAGGATTCAAATCAGCACCTTCTCCAGAGAACGTCTTCCTGTCTAAGCTCAAAGAACACACTTCAGAGAGGGAATCCAATCTCAAGACCGTGAATAATGCTGATGTATTGGAGGTGTCTGAACACCACCATTGTTATTCAGTTCACCGGCCAAATGAAGGTTTAAAGCAGACACCGGTACTGCAGTATTCAGACATCGTCAATGGAACCAGGAACTTCCACCCAGACTTTAAAATTGGAGAGGGCTCATTTTCAGAGGTGTATAAAGCAGTCATTGGAAATCAGACGTTTGCAGTGAAGTTATTTAAACGGGGGAGGCAAGCAGAATGGAAAAAACTGTGGAAGCTCTTCATGTCAGACATAGAAGTTCTTCTACTTTATCGTCATCCAAATATTCTTGAGCTGTGTGGTTACAACTCAGAGGATGGAGTGTACTGTGTGGTTTATCCTTACATGTCCAATGGATCACTGTTCTCTAGACTCCACTGTCAGGATGCGCTTCTGTTACTTCCCTGGCAGCTGCGGCTCAGTATTGCAAGGGGGACGGCCACGGCAGTTAACCACTTGCACACAGCCCAGCCCTGCTGTGTCATATGTGGCAACATCACAAGCACGAATATTCTGCTTGACGAGCACTTTGAGCCCAAGCTGTGTGATTTTGGGATGGCCTGCCTGAGGCCCCattctgtcaatcagagctacACCATCAGCCTAGACGCCGGCTCACGGAGCCACCTGGGATACCTGCCTGAGGAGTACATCCGAGATGGCAAGCTTTCAGTCAAACTGGATGTGTACAGTCTTGGGGTTGTCATAATGGAGATTTTAACAGGACGCCCACCTGTACAGGATGGCCCTAAACACACAAAGCTGaaagaCTTTCTGCACCAACAAGTGGAAGAAGGTGCTGGCGTGGACTCTTGCCTCCAATTTCTAGACACACGAGCAGGACCCTGGCCTTCCACTGTGTCCTTCAGGCTGTTCCGCTTGGCCCTGGATTGCACAGCAAGTCGCCCCAAGAACAGGCCGGCCATGAGCACAGTGCTTGAGATGCTGAATGAGTTGAAAGCAATACCCTGTGACACTGAAGACCAGCCTCACACCCTGAAAGACAAGGTAGGCCCTGACAGAGGACTGGGCCCCAGCCTGCCGGTGGAGAATGACGAAATGCAGGGATTCTTCTGTGATCCAGAGCCGGACAGAGCAGACCTTCGTGAGCTCAGGGCAGCCCGGGCAAAGGGAGGCCCGTGTGAGTGCAGCCAGTCTGAAGTCACCTTCACAGGAGGCAGGGCCAGGCTGGAGGAGTCTCTGAGCAGTGCTGCGGGAGGTGTCTCACCTGGGGACAGAGCTGCTGGGGACACCGAGCCCTGCAACGGCCTGAGGGAATCTGTGGATCTGTACTGCAGCTGGCCAGTGGAGTGTAGCTGCACGGCGGAAGAGAATGGACAGGAATATGATGCAGCTGGATGTTCCAGAAACCCTGATATTTTGGACAATGCTGCTAAGGAGAAGATTAGAAACCGAATAGAGCTGTACAATAAAGGCTTGCTCAACACAGGGGAACTTCTGTCAATGAAGGAGCTCAACTGAGGTACTGTATTCATTGGCACTGAACGAGTCATGCTCATTTCTGTGGAGCTTGTACTGTTTGTGAGATTTAATGCTTTGCGTCTCGAAGACCATTTAACCTTGAAAAGATGACGCTACTTTTTATGTTTCAATAGAAGTGGTTGAAGACGATGGAGGGTGAATTAATCGTAAATGGCTAATGGGAAAATATGAACAGTGAATGGGAGCACTCACACTCTtgtgcaaacaaaatgcatcgTCTTCATTGGAGGGTCTATGATTcagtaaaaaaatgtgttgatcTAATCAGCTATCCTCCGCTAAATCCTTTGTTGGGCGATTATCTGAAACTGATATTATATCATACAGTAGAGAGGCATGAAATGAGGTTAGTTACTCattaaattattactatttgttTTGGTGTTCTTTTCTATGAGCTTGAATGTTAGGATGGCTTGATATTTCACTGGGTTGCATTTTTCACTGgactgtacatacatatagcGTGAAACAAAAAGCTACATTAAGTACATTAAGAAAACCAAATATGTTCCATACTGTCCTTGTGAGCATTTTTGTGTGAGCTGAACATgacagaattaataaatatattgcttGTTTTGTGCAATGCTGTGCAATTGCAATTAGGCTAACtgcacttttttctttaaaaagcatatagcatgtatataaacaaatattttttttacaaaaccaaattttaattatttaataatactgtTCTATAAGTAGATGCTTTAATGagttgcaaatattttatttacactttgaTCACAccttttacaaattatatacatttgcttttgaaaattaatttcaatatggTAAAACCGTTTGCTATGTATGTAATTTACTTGAGAATGTTGCAAAACTGCAAACTCCTTAACACTGTGCAACAGTgaagtgtatgttttttttaacaaaatatgtgagCCACTATGTGGagaatgtaaaattgtaaaacatatattgGTGGAAAAAAATCAGTGTTACATGAATTCATTTATACAGACCTCTGCCAAAATTGTTAAGCACTGctggaaaatgtgttaatttctaTTGGTGTAATAAGAAAATGTGATGTATGATGGCTATGGTACATTTCTGATGCTTAAATATacgttttaattgatttgttttaagtaGTGTAAGTAGTGCTGGAAGGGTGTCCTCcgcaaataaattaataatgtgtcCTTCAGCTGGCTGGATTACTGCCTTCAGACCACAATTCCCCCTAGGTGGCATCTTCAGTCTTAGTGTTTCATtagtcagttttattttactcaatttcttagcagacactcttatctgctaattgttacaacatagcatattagttttacatttgtatccatttatacagctgggcatttactggggCAATTTAGgtaagtaccttgctcaaggatacaacagcagtatcacccacctggggattgaacccacaacctttcACAGCAGAGTCCAGGTCCAGATCCCTGaccactacaccacactactGCCCATTTTAAACTCTCATCTTGTAGGATACTTGTACTAATGATTTTACTTATAGATATATTAAACTGATGATTTTGTAAATTGGTTTGTACAAAACTCAGTTTCAAATTGTACTTTAGGTGCAAAGCCAGTGCTAAATACCATAGTCaatgttttgtacttttgttcGTGTGTCTGGATGCCCCCAATACCCGCAGATAGACAGTAAGCCTCATTTGCCACGAGCTCTAAATGAGGAGTCCAGAGAAGCCTAACTATGATTTTGGCATCAATTACCAATGGTTATTAAAATGGAATTACCATGTACTGTAATTACCGTTGGCCACAAATGGTGCCAAGATAGTTAGTTATTCCACAAAACCCCCCCTAGTCCCTccctttttaattacaatagGCCTTAAATGCCCCCTGCCTGAGAATGGGATATCTTAGCTGTGCGTGGACCATGGCAGACACCTTCTCTTATCAGCACCTCCTTTTGAGTATCTGCTTGGCCCATAGATCTGAATGGTTTTGGCTCATCATTTGACATCATCGGAAGATTCAGCTACACAATTATGCAGTCAATTAGGTAAGAAAAGTGAATTGTGAAAAatcttcattaaaattaaattgaccCACTGTCTCATTTTgctatatgttttattataaacttTCTCTGCTAAAAGATTTTTGTAGTATTAAAATTGGGTTAAACATGCATAGAAAACACTATCATGCTGAAATgctttaaatacacattaaatccTATTCACACTAACAATAGGACCGTGATGTCAGATCAACTCGGGTGAGTCATcttgtattaatgttttttccccctttttacagaccagtaaaacaaatgtaattttaaatgatgtacAAGTTATATGTAAATCAATCAGCAATTATTAGTCTTCTACTGCAGACCGTTgaacacaaaatgaatacatttatataactaCTCTTTTCTCTCACAGatgcac

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K04732 IRAK3; interleukin-1 receptor-associated kinase 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006668 True 4367 mRNA 0.43 13 13622994 13634454

Neighbor

gene id symbol gene type direction distance location
AMCG00006666 NA coding upstream 13619 13607983 ~ 13609375 (+)
AMCG00006665 LOC107594874 coding upstream 30278 13579593 ~ 13592716 (+)
AMCG00006655 NA coding upstream 243163 13364599 ~ 13379831 (+)
AMCG00006656 LMO3,lmo3 coding upstream 298277 13283154 ~ 13324717 (+)
AMCG00006659 NA coding upstream 339893 13272497 ~ 13283101 (+)
AMCG00006667 NA coding downstream 5685 13640139 ~ 13668688 (+)
AMCG00006671 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding downstream 272119 13906573 ~ 13927886 (+)
AMCG00006674 dyrk2,LOC107757277,LOC107573871,LOC107694272,LOC107587139,LOC107655591 coding downstream 343283 13977737 ~ 13986188 (+)
AMCG00006680 NA coding downstream 571667 14206121 ~ 14221251 (+)
AMCG00006679 slc35e3,LOC107710682,LOC106609860,LOC106576641 coding downstream 592933 14227387 ~ 14251947 (+)
G111272 hmga2 non-coding upstream 120423 13458039 ~ 13502571 (+)
G111240 NA non-coding upstream 265923 13353956 ~ 13357071 (+)
G111161 NA non-coding upstream 775492 12845923 ~ 12847502 (+)
G111148 NA non-coding upstream 852069 12759571 ~ 12770925 (+)
G111063 NA non-coding upstream 1269631 12350757 ~ 12353363 (+)
G111420 NA non-coding downstream 501865 14136319 ~ 14137744 (+)
G111443 NA non-coding downstream 677298 14311752 ~ 14312024 (+)
G111531 NA non-coding downstream 994272 14628726 ~ 14632980 (+)
G111562 NA non-coding downstream 1101748 14736202 ~ 14737639 (+)
G111629 NA non-coding downstream 1160264 14794718 ~ 14794949 (+)
G111197 NA other upstream 579546 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 971179 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 1299716 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 4054718 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 4898928 8710750 ~ 8724066 (+)
AMCG00006672 NA other downstream 299212 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 7303043 20937497 ~ 20944977 (+)
G112567 NA other downstream 7413882 21048336 ~ 21049038 (+)
G112600 NA other downstream 7508411 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 7630799 21265253 ~ 21304878 (+)

Expression


Co-expression Network