AMCG00006669 (tmbim4,LOC107757272,LOC107587136,LOC107567270,LOC107694279)


Basic Information

Item Value
gene id AMCG00006669
gene name tmbim4,LOC107757272,LOC107587136,LOC107567270,LOC107694279
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13610273 ~ 13616189 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006669
GGAATTACGTGAAAGCAGCTGCGTATGAGGAGCTCTTATCTGTACACTCACCGAATTAAAGGCATttgttcttttgctttttaaaaatgacaacagagAAGTATCCCCGATCGTCCATCGAAGATGATTTTAATTATGGCACCAATGTGGCGTCTGCCAGTGTGCAGATCCGAATGGATTTTCTGCGGAAGGTGTACACAATCCTCTCCATCCAGATCATCCTGACCACCGCCACGGCCGCGCTCTTCATGTACAGCGACACCATCAAGAACTTCTTGCATGCAAGCCCTGCTGTGGTGTTGGTGTCAGCGATTGGCTCCCTGGGTTTCATCTGTGCCCTGGCCATCTACAGACACAGTCACCCTGCCAACCTCTATCTGCTGCTGGGCTTCACTCTGCTGGAGGCCGTCTCTGTTGCCACAGCAGTGACGTTTTATGAGTACACCATCGTGCTCCAGGCCTTTGCTCTCACCGCGGCCGTGTTCGTGGGACTGACGGCGTACACCTTCCAGTCCAGGAGGGACTTCAGTAAATTAGGAGCTGGacTATTTGCCTGCCTATGGATTCTGATCATTGCAAGCTTCATGAGACTGTTCTTCCACAATGAGACGATGGAGCTGGTGTTTGCCGGGGCCGGAGCCCTGCTCTTCTGCGGCTTCATCATCTACGACACCCACCTGCTGATGCACAAGCTGTCCCCCGAGGAGCACATCCTGGCCTCCATCAACCTGTACCTGGACATCCTCAACCTCTTCCTGCACATCCTGCGCATCCTGGACGCAATGAAGAAGAACTAGGCCCTCTGGGAGACCTGCTGTAGCCGCCCCTTCCACAGCCCGGCGATGGCGTCTGCTGATCGGTGGGGATGGTGTGGCTACGGCAGGGCGGCGGCCAGTTCTGTTGGGATCAACATCTGCTGTGAAGAGGTGTTCCTATCTAATCAGACTTCCCCAACTGTCTTATTTTGTACCATAGTCTTGTGTATTTGTTCAGATCTGATCAGTTCCTCcataattgttttcttcttcttctgtattgAATGTTAGACTGTTTGTGCTAAAGTAATTATATGACAGGTTGCAAAAGCAGGGTAAAAGTGtggtaaaatacaataaaattagcCTGTGCATTAAGTTATAGAATGCGTCACTTGGCTGTGAATGTCGTATATAGTgaatattgtgattttttttttttaatacttaacCAGCAAACAAGGTACTATTCCAATGTGTTCAGATATTCAGATTGtgaaaatctaaaatgaagTGCCCTGACTTTCTTTCGTGGTTTAAATCACCATCTTAGACAATAGTGTAATCGTGTGGAGGGTGTTTTTTGAAGGTGATACAGGTTTAGCTAAACAACCAATCTGGACTCTCACCTAAGGGAGTCCAGACCAGGAGTGCCTGAAATCCAGGCTTTGAGGGcaacattttttagttttttttcccccctccatGAGGTTGCAACAAATGAACTGAACTGAGTATTAAAACCAGAATTTTAATGAATTGGTATTAATTACATCTTTCCAAGTTCTTTAGGCACAAAACTTGAAAGATTCAGCCCTTGACCACTGGATTTCAAACACTCGTGGTACACACAGCTTAAAGATGTGCAGATACCAGTTGTCGTATCTGGGAATCTATTTTCTATCTTCTTGGTAAAGGGATCACTGTTTGTTTGTCACATTGTTATTATCTATTATCTGTTGcctgttttattcattatttataattaagaCCGTAAGTGCAATATTAATTCTGATGTGAAAACTAGTGTATATGCACGTAAAGGTGGCAGAACTCCTCATTTATGTGAAACATGTtcatataaaaattaaatttttGTTCCTTGAAATAAATATCCATCGCTTTGAAGGTTTCATTGTCTAGTTTTAttaggctgtgtgtgtttgcatccGAGTTCTGACGGCCTGACAATGAATACCAAAACTGAGGGTTTAATTTTCACTTAGGCTATTCGATATGAACTGCATGATTGACTCTAGTATAATTGGAAAAAATGCCTTTAATCTACAATGCTAGATAAACAGGTCCACTCCACTCCAAATTTAGAAGCTAAAGCTGGTACCATTttgcagcttttgtttttcttctgtatcaAATCATATACAAAcactaaaaaaaacacctgaatgTTATTTAAAGGTCTGTTCCTGTTTGATAAACTTCTGAAaactattattaatgttgttctCTTATTGAGGAAAAGATTCCTTGTGGGTGAAGCCTGACTAATATTATTGATCTGTGGAGCCACTGGAAGTCACAATTATTTGGCATGTTTTCCTCCTATTTGCtacaattgtattttgaatgtaaataaaggagaatattttatgtttagatTGAACCTGCTGTCTCCTGCCTCATATTTCCTCCCATCATTTTATGAATGCATATCTATACACGACTGTATACTTACAAGGAATATACAAATCATAAGTTCTTAATATCACAAAtgttaattatgaattaataaaatacttcatATTGG

Function

symbol description
tmbim4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMBIM4 (transmembrane BAX inhibitor motif containing 4).

NR:

description
PREDICTED: protein lifeguard 4

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006669 True 2523 mRNA 0.41 7 13610273 13616189

Neighbor

gene id symbol gene type direction distance location
AMCG00006662 LOC106576661 coding downstream 36810 13560457 ~ 13573463 (-)
AMCG00006664 NA coding downstream 59982 13539598 ~ 13550291 (-)
AMCG00006661 NA coding downstream 78171 13529375 ~ 13532102 (-)
AMCG00006660 NA coding downstream 192341 13414739 ~ 13417932 (-)
AMCG00006657 dera,LOC107725660,LOC107655558,LOC107587132,LOC107694244,LOC107757227,LOC107594694 coding downstream 205258 13392905 ~ 13405015 (-)
AMCG00006670 grip1 coding upstream 52569 13668758 ~ 13726429 (-)
AMCG00006673 NA coding upstream 341292 13957481 ~ 13963850 (-)
AMCG00006677 NA coding upstream 485233 14101422 ~ 14103070 (-)
AMCG00006675 NA coding upstream 504249 14120438 ~ 14123758 (-)
AMCG00006676 NA coding upstream 514591 14130780 ~ 14133087 (-)
G111182 NA non-coding downstream 650645 12954610 ~ 12959628 (-)
G111158 NA non-coding downstream 849437 12759571 ~ 12760836 (-)
G110957 NA non-coding downstream 1708105 11899963 ~ 11902168 (-)
G110942 NA non-coding downstream 1813931 11794536 ~ 11796342 (-)
G110940 NA non-coding downstream 1816772 11790052 ~ 11793501 (-)
G111389 NA non-coding upstream 387564 14003753 ~ 14004141 (-)
G111421 NA non-coding upstream 520139 14136328 ~ 14137746 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding upstream 551942 14168131 ~ 14214816 (-)
G111451 NA non-coding upstream 566592 14182781 ~ 14299856 (-)
G111466 slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682 non-coding upstream 628413 14244602 ~ 14246174 (-)
AMCG00006663 hmga2 other downstream 107045 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 731617 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 1469868 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 1479890 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 1540613 12049494 ~ 12069660 (-)
G111489 NA other upstream 744039 14360228 ~ 14364422 (-)
G111621 NA other upstream 1095828 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 2136632 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 2264941 15881130 ~ 15896869 (-)
G112059 NA other upstream 4016702 17632891 ~ 17633445 (-)

Expression


Co-expression Network