AMCG00006670 (grip1)


Basic Information

Item Value
gene id AMCG00006670
gene name grip1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13668758 ~ 13726429 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006670
ATGACATCGAAGTCTGGGCTGGCCGATGGAGTTCTGTGCCCAGTTGTAAGAGATGAGGGGCCGTACACCAAACCATCCAACCCCTCAAAGCCACCAGATGGGGCGCTGGCGGTCAGAAGGCAGAGCATCCCAGATGAGTTTAAGGGCTCGACCCTAGTGGAGCTGATGAAGAAGGAGGGCACCACCTTGGGGCTGACTGTTTCCGGCGGCGTCGACAAGGATGGCAAACCCAGAGTGTCTAATCTGCGCCAAGGAGGCATCGCTGCTAGgaGTGACCAGTTAAATGTTGGAGACTACATTAAATCGGTAAATGGGATTAATCTTACCAAATTTCGACACGATGAGATCATCAGTCTTCTCAAAAATGTGGGAGAGCGAGTGGTATTGGAAGTGGAGTATGAGCTACCACCTATCTCTGTTCAAGGTTCAGgggtgatttttaaaaatgtagaggTCACTTTGCACAAAGAAGGCAACACATTTGGATTTGTCATTAGAGGAGGGGCTCACGAGGACAGAAACAAATCTCGTCCGGTTGTCATTACGACCATCAGGCCGGGCGGGCCAGCGGACAGGGAAGGGACTATTAAGTCGGGAGACAGGCTGCTGAGTATTGATGGCATCCGACTGCACGGCACCTCCCACGCCGAGGCCATGAGCATCCTGAAGCAGTGTGGGCAGGAGGCCACGCTGCTCATAGAGTACGACGTGTCAATCATGGATTCAATAGCCACGGCCTCTGGGCCCCTGCTGGTTGAAGTTGCCAAATCTCCGGGGTCGAGTTTGGGAGTTGCGTTAACTACCTCTATGTACTGTAACAAGCAGGTCATTGTCATTGACAAAATAAAGCCCGCAAGTATTGCAGACAGATGCGGTGCTTTGCATGCCGGGGATCACATTTTGTCAGTGGATGGCACAAGCATGGAGTATTGCACATTAGCAGAGTCTACCCAGCTCCTCGCCAGTGCCTGTGAGCACGTCAAGCTGGAGATCCTCCCCCATCACCAGACGAGACTGGCTCTGAAGGGCTCTGACCACGctttGGTATCATCATCCTTCTCTCCTACCTCCATGAGCGCCTACAGCCTGAGCTCCCTCAACATGGGCACCCTGCCCCGAAACATGTATCCCACCAGCCCCCGGGGAACCATGATGAGGAGGAAGCTGAAGAAGAAGGACCACAAGAGCTCCTtgtcACTGGCCTCTAGCACACTGGGCCTGGCAGGCCAGGTGGTTCACACAGAGACCACAGAGGTCACCCTGGTCAGTGACCCCATCTTAGGCTTTGGGATCCAGTTGCAAGGGGGTGTTTTTGCCACGGAGACCCTGTCATCTCCTCCTCTGATCGCCTACATGGACCCAGACAGCCCTGCGGAGAGGAGTGGCATCCTACAGATTGGCGACCGCATCCTGGCGATTAACGGCATCCCCACCGAAGACAGCACCCTGGAGGAGACCAACCAGCTGCTCAGAGACTCCAGCATCACCAGCAAGGTGACCCTGGAGATCGAGTTTGATGTGGCAGAGTCCGTAATCCCCAGCAGTGGTACCTTTCACGTAAAGCTACCCAAGAAGCCTGGTGTGGAGCTCGGCATCACCATCAGTTCCCCATCCAGCAGGAAGCCTGGGGACCCTCTCATCATCTCGGACATTAAGAAGGGCAGTGTGGCTCACAGGACGGGGACACTGGAGCTGGGGGACAAACTGCTGGCCATCGACAACATCCGCCTGGACAACTGCTCCATGGAGGACGCGGTGCAGATCCTGCAGCAGTGTGAGGACCTGGTCAAACTCAAGATACGCAAAGATGAGGACAACTCAGACGAGCAGGAGAGCTCCGGTGCCGTCATCTACACTGTGGAGCTGAAGCGTTACGGAGGCCCCCTGGGGATCACCATCTCCGGCACTGAGGAGCCTTTCGATCCCATCATCATTTCCAGCTTGACCAAGGGAGGCCTGGCCGAGAGGACCGGTGCCATCCACATTGGAGATCGGATCCTCGCCATCAACAGCAACAGCCTGAAGGGAAAGCCGTTAAGCGAAGCCATTCATCTCTTACAGATGGCAGGAGAGTCCGTCACCCTgaaaatcaagaaacaaggaGAAGCCACCAGCCCCAAGAAGTCCTCTGTGTCAGGGCGGCTCAGTGAGCTCAGCGATGCAGAGGATGACTCTCAGGTGTCCCAGAAGGCCGGCAAGCTGTCAGACCTCTACTCCACCACCATCCCCAGCGTGGACAGTGCCGTGGAGTCCTGGGATGGCTCGGCCATCGACACTGTGTTCGGCAGCCAAGTTCCTGGCTACCAGGCGTCAGGCTACAGCTTCCACAGCCACGAGTGGAGGAACGCCAAGCCCAGGGGCAGCCTGTCCCCCATCAACCGGCAGAGGAACAACATCTTCCAGGACATCGGGCTGAGCGACGACGAGTGGGACCGGCCCACCACCAGCGGATTCACTGTGGGCAATGATGGGACTGAGCCGGACCAAGAGGAGAATTTCTGGTCTCAGGCGCTGGAAGACCTGGAGACATGCGGCCAGTCTGGCATTCTGCGTGAACTCGAGGCCACAATCATGTCAGGGAGCACGATGAGCCTCAACCACGACCCCCAGCCGCAGCGCAGCCACCTGGGTAGACAGGCCAGCTTCCAGGAGCGCAGCATGAGCCGGCCCCAGTACACCCCCACCAGCCGCAGCAACACCCTGCCCACTGACGTCGGCAGGAAGTCCTTCGCCATGAGGAAGATCAAGCAGGAGATGAAGGACATCATGTCCCCCACCCCTGTAGAGCTGCACAAGGTGACGCTGTACAAAGACACGGATATAGAGGACTTCGGGTTCAGCGTGTCGGATGGGCTGCTGGAGAAGGGCGTGTACGTGAATAATATACGCCCCAGTGGACCTGCAGACCTCGGGGGCCTGAAACCCTACGATAGGCTGCTACAGATCAATCACGTACGTACCAGAGACTTTGACTGCTGCCTGGTGGTGCCTCTTATTGCCGAATCTGGGAATAAACTGGATCTGGTCATTAGCAGAAACCCACTGGCCTCCCAACCAGTGACAGAACTGGATCCGCAGCCCCTGGAGATTCCCAGCGAGTGGAATGACCAGAACAACAGTCTACAGCTGCCACAGAGCAGCCGACTAGCAGGAATAGACCCTAGGGAGCCGACAAAGACCTTATAGCAAAACAAACTTGAACTACTGAGCAAATTGAGACTGTTCCCATGGTGCTAAATCACATTAATAGTGTTTCTCTATGGAAATTAGGGCAGATATCTGTTAAGGATTTGTCAAAGCACATCAGATTCCTTCTAGTACCAGAGCATGAACCTCAGAACTAATTTCTTCCCTTTACTTGCCTACAATGGGTGTGTTTCAAAACCCTcttgtgatgatgatgatcttGGAAACCACTTGCtatgtgaaaagaaaagaaaaacagtgccATCCCTAATTTTGTAATCCAGTAGGACAATTTAGATcacagtgaaacaaacaaacaaacaaaaaagcatcaGCCGTTTACATGAATGCTTTGTGATACTGAACTGGCCCGTCTGTGTACAGGGCTACCATGTGGGTGTTTTAAAGCTTGAAAATACTATATTCCTTCACCTAAAGGAAACTTCCTACAAACCATATGAGGCAGGAAGGTAGCAGTATAGCTCCAGGCTTCCCCCCAGCTACAAGAGTCTGAGACGGCAGTGAACAGGAGGTGTAATCAAGCAGAAGTGGGTCACTTGATTcccaatgtttatttttgtattttttttgaagaagaagaaaaacaaaagtcttgTAAAGCCTGCAGATTTTAATGCAAGTGATGTCTGAGTGCTGTCAAACACAGTGGTCTAGATTAAGAGGAACAAAGATTTGGATCCCGATAGCAGCAGACAACCCCAATAAGAGCACCCCGGTGGACTGCTGATGTCATAATCGCGTGGATACCGAAGACTCCGACTGACGGAGGAACGAATGGTTTAATCGTAGATCACAACACAGAGCAGATATACCTGCTGATTGGAAATTTACTGCATGAGACCTTTTTTGGACTATTTTATATTCACAATGTGTACTGAAGTGAGGAAAACTGCTACATTTGGCTAATTTCAGTTAACTAAGTAATATCTTTGCGTATTTGCTTTTTTCCTCCCGTTCAACACTTGATAATTGTGCTTAATGATGAGAACTGGTTTAGACAGGCTGTAATTTGGAATTGTCTGAAATGTCTTAAGCAGCAccaacacatatatatatatatatataatgtggtgGAGTGGTTTTCCACTTTCAGTTTTACCCATAGggataacatttaaatgttaacacAAGTGATAGGAAGTACACTTAGTGGGAACTGCAGTCATCTGCCAAAGTCGTCGTAATTGGTTCAGTCGAGACCGATGTTGAATCAGTGTCCCTATTCAAAGCCATCATGAAAATTCAGGAGTAATCAGTAAACCGTTAAATTACCCGTGAAAAAAAATTATAGAGCAGAGACGGTTTCTGCAGAATGAAGCTCCAAGGCCCTCCCATGCGATGCTCAGTACAATGTTGCCGATGCAAGACTAGAGCGCGTAAGTCTGGGGATGCCTTTATTGGATCTTTGCTGACTAGGGGGTCAAGATACTTTTTGTTCTGATTGTACCCTTTATAGGATAGTGCAGAAGACATCTTGAGGGACAGCAGATATTTAATTATCCCAAAGCTGCACTGAGATCTTAGAGTAGCTATGGACAATGAGTGGTCTCGTTTTTCTTCCAAAGAGCATTCATAGCTCCGTTTGTGTCATGTGGATGGGTGTGTGTAGCTACCAGGAGCTGGGCACAACAGTGGCAATATTCCCTGGCCTTGATGTGTTCATATTCATAGGAAAATGACACCAATTCCTCAGCCTGTCTAAATAATCCAAAAGGCGGGAGCAACGCCAAATCCATTACGGGATACAAATCCTCACCACGTGGCCGGGCAGTGTATGTGCGAATCGGATTTTGCCTTCTGTCAACTGGAGTGTGAGTTACGACTGCTGTTACCTCCTCAGAAACTGTGGACACTAATTGGCGTTTGCATTTGTGTCGATGAATGCATGGTCCATTTAAACAACTCTGAAAATTGAGTTGATTTGTATTTCTCAGTTGAATTAATTCAGAGGTTCCCAAAATGTGGGGCAGGAAGGAAGCCTTTGGGGGGATGAAACATAATATGACTTCTTGTAGGAAAGAGTGGAAAGCAAGTAAAAGGCAGTGAAGTATGTGAAAAGGCACTTGACGTTAATACTATCTGCAGCCCTTATCCTCCACTGCAGCTGAGAAAGTCTTAATATGGATTTTTGAATCCGAGCTTCAAAAGTGACATTTCGAATAGCTATGCAAAAACAGGCCTAAGgattaaacacttaaaaatatataatgtttattatattttatagtgtAACAGGTACAATTGTATTACAATTCCTGTTATCTGGCAGATCTGAGATATTAAATGGCAGTTGCTGCATGttaacaacacacaacaaaacacatgcTACTGCTACGACTGGAGGTTACAGGATGCAATTTGGGAAACCCTGGATTAGTGACAGCTGCAAAACAGTTAGGAATTTAGGAAAAATCATTTTTCATAGGTCTCAACAGCCTAGTATTTTTTctccccaccaccccccccccccccccccgatccAAAATTTTAAATTATCAGAGAGACTACTTGACTGTCACAGGAGACAAGCAAAGGCTTCTGGGCCCCTCGGGATGTCTGTTTGTACACTAGAGGGAAAAAAGCCTTGTGTACATGGTTTTTACTTGTATTCAGCTCCGATTTAACTGTGGTAATCCCATCTAAACCCAATAGATAACAAAAGCAAACTAAGTAAAAGGGTGTTCTTTCGGAGTCAGCCTCAGTCACTCACTCACGTTTCCCTACACCGCCAACTTTTTATATATGGCAGCAAGCATGAGGTGATCAAAAATAACCCAAATAGCTACAACTGTGcttttctactttgtatttttccctggtttaagtaaatatttaatatgctaGTCTATGTGGAACtgacattctttaaaaaaataaaaagggtatGTTTATGTACCTTTTGTAGTGTTTCTGGGTTGGCAGCTGTGAAGAAGGCTGTATAAATATGATCATTTGTGAAATGGCacttgtatgtttgttttgagaGTTTGGGGTTTGGTAAAAAAATCGCTGTATGTTGAGTgtagatgtttttctttcctttattttttttaaacaaaaaaatcaaagtttaaaaatgtcagttcAAGAGAATTTTGCATTCTGAAAACAGGTATAGTACAGcagcaaaataatattaaacggGCTGCCTTGGGGAATAAAAGAAGTAAATACCTGTCTGTAAAATAGTGGCTTTAATTGATGTTACCCTGTCAGTGCTCACAGAACACCTAAATTCTACTCACCCACTCGTTTGTAACGGTATCATACACTTACTGCAACGACAAACTTTCATTCCAGAAACATCTCAACTTATTTGTGGCGAAtgctgaaatacaaattaagaaggatgttgttgtttttaacttaaTTCTCAATCCATTGCTGGATCACGTTCAGGTATGTTCTTGTGGTTGGACTCCAATTACagaattttttgttgttgttagagCCCTTCTTTCCCATTGAAACCAGCTATTAACATTAATCTCAAATACTGTTTAGCCATACTTAACTGATAAAGTCAGTTCTgattaatttgccttttttttttgtcgtccTCTGATTTCAAGCAAATTTAAGTAATGTTTAATACTTTAATGCTGCGTTTCTACTGTAACATGGCACATTTATAGCTATACAAACTATACCTGCaccttattttgttatttatagtaTACCACATTATCGccaatttgcttattttattcataaagaAACCTTAAGGTTACGTTCCTGCTTCAAaggttttttctttccctttgtgGAGACATTTAACTGGAATTTAGCACTGCCAATAAAGAATATTAGATACCCTTATAAAATTGTAACgtaaatttaaatcaatttcacATTCAACTCccttaaaa

Function

symbol description
grip1 Predicted to enable glucocorticoid receptor binding activity. Predicted to be involved in neurotransmitter receptor transport, endosome to postsynaptic membrane. Predicted to act upstream of or within dendrite development. Is expressed in brain; eye; median fin fold; and somite. Human ortholog(s) of this gene implicated in Fraser syndrome 3. Orthologous to human GRIP1 (glutamate receptor interacting protein 1).

NR:

description
PREDICTED: glutamate receptor-interacting protein 1 isoform X8

GO: NA

KEGG:

id description
K20251 GRIP; glutamate receptor-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006670 True 7076 mRNA 0.47 23 13668758 13726429

Neighbor

gene id symbol gene type direction distance location
AMCG00006669 tmbim4,LOC107757272,LOC107587136,LOC107567270,LOC107694279 coding downstream 52569 13610273 ~ 13616189 (-)
AMCG00006662 LOC106576661 coding downstream 95295 13560457 ~ 13573463 (-)
AMCG00006664 NA coding downstream 118467 13539598 ~ 13550291 (-)
AMCG00006661 NA coding downstream 136656 13529375 ~ 13532102 (-)
AMCG00006660 NA coding downstream 250826 13414739 ~ 13417932 (-)
AMCG00006673 NA coding upstream 231052 13957481 ~ 13963850 (-)
AMCG00006677 NA coding upstream 374993 14101422 ~ 14103070 (-)
AMCG00006675 NA coding upstream 394009 14120438 ~ 14123758 (-)
AMCG00006676 NA coding upstream 404351 14130780 ~ 14133087 (-)
AMCG00006678 NA coding upstream 412636 14139065 ~ 14154332 (-)
G111182 NA non-coding downstream 709130 12954610 ~ 12959628 (-)
G111158 NA non-coding downstream 907922 12759571 ~ 12760836 (-)
G110957 NA non-coding downstream 1766590 11899963 ~ 11902168 (-)
G110942 NA non-coding downstream 1872416 11794536 ~ 11796342 (-)
G110940 NA non-coding downstream 1875257 11790052 ~ 11793501 (-)
G111389 NA non-coding upstream 277324 14003753 ~ 14004141 (-)
G111421 NA non-coding upstream 409899 14136328 ~ 14137746 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding upstream 441702 14168131 ~ 14214816 (-)
G111451 NA non-coding upstream 456352 14182781 ~ 14299856 (-)
G111466 slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682 non-coding upstream 518173 14244602 ~ 14246174 (-)
AMCG00006663 hmga2 other downstream 165530 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 790102 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 1528353 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 1538375 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 1599098 12049494 ~ 12069660 (-)
G111489 NA other upstream 633799 14360228 ~ 14364422 (-)
G111621 NA other upstream 985588 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 2026392 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 2154701 15881130 ~ 15896869 (-)
G112059 NA other upstream 3906462 17632891 ~ 17633445 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location