AMCG00006671 (cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592)


Basic Information

Item Value
gene id AMCG00006671
gene name cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13906573 ~ 13927886 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006671
CTCCATTGAAAAGCGGCGAACTCTGACCTCTCAGCGAAAGCgcctggagcagcagcagcacttcCACATTTCTGCCTCCTCCGCCTCCCTCTGCAGAGACAAGTGAGTCAGATCTCCATTCAAACACGGCTAAACTCCGAGGGATGAGACTCTACACCCCGACCAGGCGATACAGCTGCTGAACGAAGTACACCGACCCCGTCAACCGAGAGTGGCTGCGCCGATCAACCACGACTTTAGgccagaaagagagacagggcTGGAGAGCGAATCCTGACCGGAGAATACTGACAAGTGTTACCAGCTACTCCACAGACTGCAAACATGGCGAGCGCCTCCTACCACATCTCCAATCTGCTGGAGAAAATGACATCTAGCGACAAGGATTTCAGGTTCATGGCCACCAATGACTTGATGTCAGAGCTCCAGAAGGACTCCATCAAACTGGATGATGACAGCGAGCGCAAAGTGGTTAAGATGATCCTTAAACTTCTGGAGGATAAGAATGGAGAGGTGCAGAACCTGGCTGTCAAATGtCTGGGCCCTCTTGTCAGTAAAGTGAAGGAGTACCAAGTGGAGACTATTGTAGACACTCTGTGTACAAATATGTTGTCAGATAAAGAACAGCTTCGTGACATTTCCAGCATTGGACTGAAGACAGTGATTGGAGAACTCCCTCCAGCCTCTAGTGGTTCTGCCCTGGCTGCTAGTGTTTGTAAAAAAATTACAGGACGTCTCACAAGTGCCATAGCCAAGCAAGAAGATGTCTCTGTTCAATTAGAGGCCTTAGACATTATGGCAGATATGCTATGCagGCAAGGGGGCCTTCTGGTAAACTTCCACCCATCCATTTTGAGCTGCCTACTTCCACAGCTGACTAGCCCACGGCTGGCTGTGAGGAAACGAACCATAATCGCCCTGGGCCATCTTGTAATGAGCTGCGGGAACCTTGTGTTTGTGGACCTCATTGAGCACTTACTCACAGAACTGTCTAAAAACGATTCCATGTCAACCACCAGgacatacatacagtgcatcgCAGCGATcagcaggcaggctggccacaGAATTGGTGAATACCTAGAGAAGATCATTCCTCTGGTGGTTAAGTTCTGTAATATCGATGATGATGAGTTAAGGGAATACTGCATCCAGGCCTTCGAGTCCTTTGTCAGAAGGTGCCCAAAAGAAGTCTACCCACATGTTCCAACTATTATTAGTATCTGTCTTAAGTACTTAACCTATGACCCAAATTACAACTAtgatgatgaggatgaggatgagaaTGCTATGGATGCAGATGGTGCAGATGAAGATTATCAAGGAAGCGACGATGAGTACAGTGACGATGACGATATGAGCTGGAAGGTGCGTCGCGCGGCCGCCAAGTGCCTGGATGCCGTGGTCAGCACGCGGCACGAAATGCTGCCCGAGTTCTACAAGACCGTGTCCCCTGCGCTCATCGCCCGCTTCAAGGAGCGGGAGGAGAACGTCAAGGCGGATGTGTTTCACGCCTACCTGTCCCTGCTGAAGCAGACCCGGCCGGCCCAGAGCTGGCTGTGTGACCCTGACGCCATGGAGCAGGGCGAAACCCCGCTGACTATGCTGCAGAGCCAGGTTCCTATGATTGTGAAAGCCCTTCACAAGCAGATGAAGGAAAAGAGTGTTAAAACTCGTCAGTGTTGCTTCAACATGCTGACTGAGCTGGTGAACGTGTTACCAGGAGCTCTAACTCAGCACATACCCGTGCTGGTTCCAGGTACGAAGCCAGTGATTCTAGTGAGTGATGGCCGAAACGCAATCGGAGGAATCATATTTTCCCTTAATGATAAATCCAGCTCCTCAAATCTCAAGATCGATGCACTGTCCTGCCTCTATGTCATTCTGTGCAACCACACTCCTCAAGTCTTCCACCCCCACGTCCAGGCCCTCGTGCCTCCTGTCGTGGCCTGTGTCGGGGACCCTTTCTATAAGATCACATCCGAGGCGCTGCTTGTGACGCAGCAGCTGGTGAAAGTCATACGACCGCTGGACCAGGGCCCGGCCTTCGACGCCTCTCCGTACATCAAAGACCTCTTCACCTGCACCATCAAGCGGCTCAAGGCGGCCGACATCGACCAGGAGGTGAAGGAGCGCGCCATCTCCTGCATGGGCCAGATCATCTGCAACCTGGGGGACAGCCTGGGCAGCGACCTGCCGAGCACGCTGCAGATCTTCCTGGAGCGGCTGAAGAACGAGATCACCCGGCTGACCACGGTGAAGGCGCTGACGCTGATCGCCGGCTCCCCGCTCAAGATCGACCTACGACCCATCCTCGGGGAGGGTGTGCCCATCCTCGCCTCCTTCCTCAGGAAGAACCAGCGCGCCCTGAAGCTGAGCACGCTGGCTGGCCTGGACATCCTAGTCAAGAACTACAGTGACAGCGTGACTCCGGCCATGATCGACGCCGTGCTGGTGGAGCTGCCTCCTCTGATCAGCGAGAGCGACATGCACGTGTCCCAGATGGCCATCAGCTTCCTCACCACCCTGGCCAAGGTGCACCCGGCCTCGCTCTCCAAGATCAGCGGATCCAGCGGATCCATCCTCACCGAACTCATTTCGCTGGTGCGGTCCCCCTTGCTGCAGGGGGGGGCCCTGAGCGCCATGCTGGAATTCTTCCAGGCTCTGGTGGGCACCGGCACCACCAGCCTCGGGTACATGGACTTGTTGCGAATGTTGACGGGCCCCGTCTACGCGCAGAGCACCGCGCTCACCCACAAGCAGTCTTACTACTCCATTGCCAAATGCGTGGCAGCGCTGACGCGGGCCTGTCCCAAGGAGGGCCCGGCCGTGGTGGGCCAGTTCATCCAAGACGTGAAGAACTCCCGGTCCACCGACTCCATCCGCCTGCTAGCCCTGCTGTCCCTGGGGGAGGTCGGCCACCACATCGACTTGAGCGGCCAGCCCGAGCTGAAGTCAGTCATCCTGGACGCCTTCTCCTCCACCAGCGAGGAGGTGAAGTCGGCGGCGTCCTACGCGCTGGGCAGCATCAGTGTGGGCAACCTGCCCGAGTACCTCCCCTTCGTCCTGCAGGAGATCTCCAGCCAGCCCAAGAGGCAGTACCTGCTGCTGCATTCCCTGAAGGAGATCATCGGCTCGGCCTCTGTCTCCGGCCTCAAGCCCTACGTAGAGAGCGTCTGGACGCTGCTTCTGAAGCACTGCGAATGCACAGAGGAGGGCACCAGGAACGTGGTCGCTGAATGCCTTGGGAAGCTCACCTTAATAGACCCAGAGACATTATTGCCAAGGCTAAAAGGGTACCTTGTGTCAGgCTCATCCTATGCACGTAGCTCAGTGGTGACTGCAGTGAAATTCACCATTTCTGACCACCCTCAGCTTATTGATCCCCTGCTCAAGAATTGCATAGGCGATTTCCTGAAGACATTAGAAGACCCAGACCTTAATGTGCGAAGGGTGGCTCTGGTCACGTTCAACTCCGCGGCACACAACAAACCCTCTCTAATACGGGACCTCCTCGACACTGTTCTTCCACATCTGTACAACGAAACGAAAGTGCGAAAGGAACTCATCAGAGAGGTGGAAATGGGACCTTTCAAGCACACTGTGGACGATGGCCTGGACATCCGGAAGGCAGCGTTCGAGTGCATGTACACACTGCTGGACAGCTGCTTGGACAGACTAGATATTTTCGAATTCCTAAACCATGTTGAAGATGGGTTAAAGGACCATTATGACATCAAGATGCTGACTTTCTTGATGCTAGCCAGACTATCCACGCTTTGTCCCAGTGCAGTTCTGCAGAGGCTGGACAGACTCGTGGAGCCACTGCGTGCTACGTGCACAACAAAGGTGAAAGCCAATTCAGTGAAGCAGGAGTTCGAGAAGCAGGACGAGCTGAAGCGGTCCGCCATGAGAGCAGTAGCAGCACTTCTGACCATTCCCGAGGCAGAGAAGAGCCCCCTGATGAGCGAATTCCAGTCTCAGATCAGCTCCAACCCCGAGCTAGCGGCCATCTTCGAGAGCATCCAGAAGGACTCCTCGTCTGCAAACATGGAGTCCATGGACACtagttaaaatgtttgcttcCAAAACTTGGGGACCCTTTTATTGTTCCATGCATTGCACTGAAACTACAGTTTAGAAAACGaaagaaaacctaaaaacaaaacaaaaaaaggcaaaaattaaaaagaaaacattgtttaagcTCCAATGCTTATCACTATGTTCCTcttttaacataaacaaaaaatggtaTGTTTGGCTATTCATtcattgttgcttttttgtctAGTGTTTAATCCAGAAAGCTGCAGAGTGCACAGGTACTTCGTGCGGCATTCAGAGGCTATCAAGCATTATGTGGTAGCATGAATTGATTGGAAAGGAATGGCATAAAACCTGCTGTCAGCTTTAAGTTAACGATGGGAGATCTATAGATGTATATTGGAGTAGGATCCAATACGTTCTTTGGTTATAACTTGGGATGGGAGAAAGGGGGGAAATAGGATTTAAACTTTATGTAATTTCATGACCatcccttttttttaaatttaatttcctttatcaGTTTCCATGCTGTTCACATccagattgtgtttttgtactATTGAAATATCATCTCTGCCTACTATTTCTTTGTTTGGGCTGTTGGGTTAAATGAGCTCAGATTGGCGACAAAGAAAATCTGCTTTGTAAGATTTATTACATTAAAGTGGTTTGGCACAGTTggtaaaaatgcagaaacaaaaatccTCACGTGATTTCTTCAGGGTTAGCAGAGCGGCATGTgaacttgtattttttgttcagtttcatttttttaattattttttgcatgaGCAAGTATCCCAGTGTGTAGCTTGTCATTTAACAGTATGTACAGTACAACAATACATTTACTGCCACACTCGGTATACCTTTAAGAATTCTTTTCTACTGGTAGTTTGCAGTTAACGATCAGCAGCAGAGTCAAATACAAGACCACAAAACTGATTTCTCTTCAGGAGTTTCAGTTGAGAGGTGGGACCGGACACCTCCCAGAGTTGAACTGTGTATTTTGGCAAAAATGtgaccaatgagaacaaattCTAAAGTAATATCAGGAATAAAGTATAGTTTTTGTGATGCTGAGCTCCAGAGCTATTATACCTATTTGAGCACTTAGAGTTTGCATATAGTTGGTAAGTGATTCAATTGAGAAGGATGTAGTCCTTGCTAAATCTGTAGTTGCACTTTCATTGGTCTTCTCGACAGCTTTGCAAATCACTCACTCGGTCAACAGGTCGGATTAGATTAgtaatatcacattatttgccTTTGGTAATAAAGAAGTATCCTAGTCAAAGTCTGGTATCCAAGTTAGCAGCCTGGATGGaatccagtttttaattttgtgggAGCAAGGTGAGCAGAATTAAACATCAGGGTACTATGATGGATTGAATCAAATGAACAGGCCACTACTTGAGTACTGTGAACTTTATGTTCACCTATAATGGGAATTTACAGACACATCtccaacaaaattaaaatgtttactttggCTTGCTTTTAAATCTTTCTTTGGTCCCCCAGCCAACACtgtatgaaatacatataaagtcTACTGTTTCTGCCCATCTATATTATGAAGTCTGCTTTGGTACTTAGACAATGTGATTATATCTGCATTCTCTCGCCTGTGGCCTTCACAGGTGGCACCTGCTACCTTGTAGTATAAAAAAGTTGAAATGACCGACCACCATTCATCCTTGCATAGCAATGGGAAAGTCAATCTCACTTTAAACTCATTTTCATAAACTTGAATGGAAAGTCTCAAACCAGTTGTATTTTATGGAGAGCTGTAGATGACTGGTGTACTTGATGATCCAAATGATGCAATAAACA

Function

symbol description
cand1 Predicted to be involved in SCF complex assembly and protein ubiquitination. Predicted to be active in nucleus. Orthologous to human CAND1 (cullin associated and neddylation dissociated 1).

NR:

description
PREDICTED: cullin-associated NEDD8-dissociated protein 1

GO: NA

KEGG:

id description
K17263 CAND1, TIP120A; cullin-associated NEDD8-dissociated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006671 True 5889 mRNA 0.49 15 13906573 13927886

Neighbor

gene id symbol gene type direction distance location
AMCG00006667 NA coding upstream 237885 13640139 ~ 13668688 (+)
AMCG00006668 NA coding upstream 272119 13622994 ~ 13634454 (+)
AMCG00006666 NA coding upstream 297198 13607983 ~ 13609375 (+)
AMCG00006665 LOC107594874 coding upstream 313857 13579593 ~ 13592716 (+)
AMCG00006655 NA coding upstream 526742 13364599 ~ 13379831 (+)
AMCG00006674 dyrk2,LOC107757277,LOC107573871,LOC107694272,LOC107587139,LOC107655591 coding downstream 49851 13977737 ~ 13986188 (+)
AMCG00006680 NA coding downstream 278235 14206121 ~ 14221251 (+)
AMCG00006679 slc35e3,LOC107710682,LOC106609860,LOC106576641 coding downstream 299501 14227387 ~ 14251947 (+)
AMCG00006686 cpsf6,LOC107729149 coding downstream 349589 14277475 ~ 14297977 (+)
AMCG00006682 LOC106609801,LOC107717680 coding downstream 374340 14302226 ~ 14308572 (+)
G111272 hmga2 non-coding upstream 404002 13458039 ~ 13502571 (+)
G111240 NA non-coding upstream 549502 13353956 ~ 13357071 (+)
G111161 NA non-coding upstream 1059071 12845923 ~ 12847502 (+)
G111148 NA non-coding upstream 1135648 12759571 ~ 12770925 (+)
G111063 NA non-coding upstream 1553210 12350757 ~ 12353363 (+)
G111420 NA non-coding downstream 208433 14136319 ~ 14137744 (+)
G111443 NA non-coding downstream 383866 14311752 ~ 14312024 (+)
G111531 NA non-coding downstream 700840 14628726 ~ 14632980 (+)
G111562 NA non-coding downstream 808316 14736202 ~ 14737639 (+)
G111629 NA non-coding downstream 866832 14794718 ~ 14794949 (+)
G111197 NA other upstream 863125 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 1254758 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 1583295 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 4338297 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 5182507 8710750 ~ 8724066 (+)
AMCG00006672 NA other downstream 5780 13933666 ~ 13939475 (+)
AMCG00006811 NA other downstream 7009611 20937497 ~ 20944977 (+)
G112567 NA other downstream 7120450 21048336 ~ 21049038 (+)
G112600 NA other downstream 7214979 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 7337367 21265253 ~ 21304878 (+)

Expression


Co-expression Network