AMCG00006672


Basic Information

Item Value
gene id AMCG00006672
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13933666 ~ 13939475 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006672
ATGGAAGCTGAAATCTCTTCGAGGAGGAGGAACCCCTTATGTCTTGTGGAACAATCTTCTGAGCTTCAGCAGGAGAAGCCAACCAATCCCATGGAGACATATGTTAAGAAGAAGAGAGTGAAATCCCCCCCCAGAGACACCTCCCCCGTGCCCTCTCACTACTCAGAGCCGGTCGTCCTCAGACCCTACAAGGGGACCACCCAGGCCGTGGGTCATCTGCGAGGGGCCGCTGGAGACGATGACGACGTGCTGAGTCTGAAGAGCGTGCAGAGTGTCAGGAGCACAGTGGGGTTCGCTCCAGTCAAGAGATACAGGGGTTTCTCCAGGAGGCTAGCTCCTAAATACAGGCTGCCCCCAGTCTGTGTGGAAGGAGACCCCCGCAGGCCTGATGTAGGTGGATTCTGTCAGCTTCAAAGGGAACGTACTGAAAAAGCAGAGGAGCAGATAAGTGACGTGCCAGGCAGCAGGAATGACAGAGCAGGGGCCCTGGACTTAACTCCCTCGACTAGAATCACCTTTCAAAGCCCAGCGGTACAAGGGCTGTTCCCTGTCACTTCAGACAGCAGCGCCGCAGATTGGAAGGTAGATAAAGTGAAAATCCCTCCACACACAAAGTCTGTCTCATCCAGCACGACTACGTCCAGTTTCAGCTCCTACATTAGCAGAGCCTCCAATAAATCGGGGCGAAGTTCAACAGGCCGCTCCTGCGTGAAGCAATCCGGAGAAAATAACCCCGCTCACCCGGATCACATGGCAAAGCCGAGGGACGACCGCGGAAACGGGCCGGAGAAAAGTGAAATCCTGATGATAGAGCTGGGAATTACTTTTCCAAAAATAGAAAGCAATTTAAGAAGCCGCAATCAGAAACACCCTATGAAGTCGGCGCTGAAGAAATCGTTTGACTGGAAGGCTTACTCACAGAAGATAAGGCTCAGTGAGACCCGGGGAAAGGATGGCGGCGGGGCTGAGATGCTATCGCCAGACAATTTCCACTCTCTGCACACTGCCCCGCCGTGTCCGTGCTCGAAGGCCGTCTGCACCGGCTGCTTTGGACCACAGAGGCTCGCTTCTCTCTTAGAAGAGAGCTGTGATCCATCACCGAATAACAGCCTGCTGGAACCTTTCTCAGGGTTTCGGGAGTATTTGCAGCGGCAGCTTATGCGTTCCCCTGGGCCGTACAGAGCTGGCCAGACCCCGGCAGTGAGACCGGGTGGTCCTGGTACTGGGGTGGCATCCATGCTTAACTATCCTAGCCCGACTGAGAAGGCCCTCCTTCTGTTGCTGCCCCCTCCTCTGCCGGGCTCCCACGGTCCCCTGCCACAACGCACCGTGGAGCTGTCCAGTTCTCACGGAGGAGTGCTGCCCAAAATCACCATGACCTGCCCCACACCCTCACCCAAACCCCCCATGCCAAGATAG
>TU139484
GTTCACAGTCAGCTGAACACGGCCACGGTCTCAGCTGCATTTCCAAGTTAAAAcaatcttttaaatcttttaaaagtGCTGTTTCACTCACGCTTCATTGTTTCCACGTTGAAAATGCACAACAGGAAGCTCTGTGGATTAAGGCCGATTCACCACATGTGAGGAGGAACCCCTTATGTCTTGTGGAACAATCTTCTGAGCTTCAGCAGGAGAAGCCAACCAATCCCATGGAGACATATGTTAAGAAGAAGAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006672 True 1419 mRNA 0.56 4 13935146 13939475
TU139484 False 255 lncRNA 0.44 2 13933666 13936254

Neighbor

gene id symbol gene type direction distance location
AMCG00006671 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 5780 13906573 ~ 13927886 (+)
AMCG00006667 NA coding upstream 264978 13640139 ~ 13668688 (+)
AMCG00006668 NA coding upstream 299212 13622994 ~ 13634454 (+)
AMCG00006666 NA coding upstream 324291 13607983 ~ 13609375 (+)
AMCG00006665 LOC107594874 coding upstream 340950 13579593 ~ 13592716 (+)
AMCG00006674 dyrk2,LOC107757277,LOC107573871,LOC107694272,LOC107587139,LOC107655591 coding downstream 38262 13977737 ~ 13986188 (+)
AMCG00006680 NA coding downstream 266646 14206121 ~ 14221251 (+)
AMCG00006679 slc35e3,LOC107710682,LOC106609860,LOC106576641 coding downstream 287912 14227387 ~ 14251947 (+)
AMCG00006686 cpsf6,LOC107729149 coding downstream 338000 14277475 ~ 14297977 (+)
AMCG00006682 LOC106609801,LOC107717680 coding downstream 362751 14302226 ~ 14308572 (+)
G111272 hmga2 non-coding upstream 431095 13458039 ~ 13502571 (+)
G111240 NA non-coding upstream 576595 13353956 ~ 13357071 (+)
G111161 NA non-coding upstream 1086164 12845923 ~ 12847502 (+)
G111148 NA non-coding upstream 1162741 12759571 ~ 12770925 (+)
G111063 NA non-coding upstream 1580303 12350757 ~ 12353363 (+)
G111420 NA non-coding downstream 196844 14136319 ~ 14137744 (+)
G111443 NA non-coding downstream 372277 14311752 ~ 14312024 (+)
G111531 NA non-coding downstream 689251 14628726 ~ 14632980 (+)
G111562 NA non-coding downstream 796727 14736202 ~ 14737639 (+)
G111629 NA non-coding downstream 855243 14794718 ~ 14794949 (+)
G111197 NA other upstream 890218 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 1281851 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 1610388 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 4365390 9563952 ~ 9568276 (+)
AMCG00006552 NA other upstream 5209600 8710750 ~ 8724066 (+)
AMCG00006811 NA other downstream 6998022 20937497 ~ 20944977 (+)
G112567 NA other downstream 7108861 21048336 ~ 21049038 (+)
G112600 NA other downstream 7203390 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 7325778 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 7678157 21617632 ~ 21622508 (+)

Expression


Co-expression Network