AMCG00006679 (slc35e3,LOC107710682,LOC106609860,LOC106576641)


Basic Information

Item Value
gene id AMCG00006679
gene name slc35e3,LOC107710682,LOC106609860,LOC106576641
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14227387 ~ 14251947 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006679
CGAGTTCgtgttttgatttttacatttaaaataaaacatttatgtttGAATAACACGCAAGGGAAACTAATCTATTGATTGATTTGCGTGTATTCACATCATATTATTGCATGAAATGACGTGGAAAGAGGCCGATCGATTATCTCTGTGTTCCACTGTCGTGCCTTAGCCGAGCGGGAATACGGAAAATAATTCCGCGTTCACTGTGAACAGTGCTGCAGCCATGGACTGGGGCAGCAATGACCTGATGTCACCTGTGGTCCGGGATGCCGAGGTGACCCGAGCTGCGCGCAGGAAGAGCTCCCAGAAGAAGGTGGCCTTTCCCTCGCCTCGCAATGACTCCCCTGGCACTGCCACCACCCCTGCCCGCCCACAGCTGCCCCGCACCCCCGGCTCCCTCTTCAAACAGACCTtCACTCCGAGGAGCGCCCTGAGGAATGCGGATGTGTCGGCTATCCTGGGAACCAGTGTCCGATCACCGCGTTACATCCACACGCCGGGCCACCTCGGCAGCATAGCCACAGCGCAGAACCTGGATGAGAGTGACTGGACCTGCACCCTGTACCCGTCGCCTCAGCCAGCTGGCCTCGGGGAGCATCGTGGAGGACCTTCTCTGAGCCTGTTCTCCGACTTCCTGCACTCCTTCCTGAGACACTCGTCCAGTGCCGTCTTCGACCTGCTGGAGGAGTACGAGACCATCTGTGGAGAGCAGGTCCGGACGCTGCAGAAGATCATCTTAAGGGCGGCGCCCGGGCAGCAGAAGTTCTCCAAGACAGCCAGCGTGCTGTGGCTGCTGCAGCAGGAGATGGTGACCTGGCGGCTGCTGACGTCGCTGTACAGGGACAGGATCCAGTCAGCTCTTGAAGATGAGCTCATGATAGATGTTGCTGCTCAGAGCGCCAGCGAGAAGGTGATCATGGAGCACCTGTTCCAGAGGGACGCCGTTGTGCGGCAGAGCCAGCTGGTTGTGGACTGGCTGGAGAGCATTGCCAAAGATGAAATTGGGGACTTTTCTGATAACATAGAGTTCTATGCAAAGGAGAATACCTTACACACTCTGAAACAGAGAAGAACTACTTCCCATGGAGGCTTCAACCGGCCCCTGGTCACTGAGCTGGACCCTGACGCCCCGATACGACAGAAGAGGCCCCTGGCTGACCTGGACCGCGAGGATGACGTCCGGCTGCTGAAGTATCTGTTCACCCTGGTGCGTGCCGGCATGACGGACGAGCTCTACCACGATCCCAACATCAACGGAGGAGCGGAGCTAGAGCCGGTGGAGGGGAACCCGCAGCGCTGCGTGTGGAAGGTGTGCTGCTGGAGGATGGCCGAGGAGGAGCAATTCAACAGATATGAGCGAGCGATCTACGCTGCCCTAAGTGGAAATCTTAAACAGCTGTTGCCAGTGTGTGAGACGTGGGAGGACACGGTGTGGGCGTATTTCCGTGTGATGGTGGACACTCTGGTGGAGCAGGAGATCCGGTCCTCGGGCACGACCAGCGAGGAGCTGGAGGAGTTGCCCAGGGAGTACCTGGAGGCCAActGGACTTTGGAGAAAGTGTTTGAGGAGCTCCAAGCCACAGAGTCCAAGAGGGTGTTGGAGGAAACGAAAGAGCACTACCACATCATTCAGAAGTTCATCATCCTAGGAGATCTGGATGGGCTGCTGGAGGAGTTCAGCGAGTGGCTTAGTGGAGGGAAGCCGGCCCTGCCCTCTCATCTTCTGCGCTTCATGAGCCACCTGATCCTCTTCTACCGCAGTCTGGGCATGCAGCTCAAGGAGGAGGTTGCTGTGGATGTCCTGAAGGCGTATATCCAGcTGCTAATCAGCGAGAAACACACAGACCTGATCGCCTTCTATGTCAGCCACCTGCCCCAGGATGTGGCGGTCGCCCAGTATGCCCAGTTCCTCGAGTGCGTCACTGAGACGGAGCAGCGCAAGCACTGTTTGGAGCTGGCCAGAGAAGCAGGGCTGGAGGTGGCAGCGGTGACCAAAACTGTGGTGGAGAACATCCGAGAGAGGGACGCGGAGGATTTCGCTCACCACGACCTCACCCCCGCTCTGGACACGGGCACCTCGGAGGAGGACCTGCGGAAAATCGATGTGATCGACTGGCTGGTGTTCGACCCATCGCAGAGAGCCGAAGCGCTGAAGCAGAGCAACGCCATCATGAGGAAGTTCTTGGGTTCAAAGAAACATGATGCTGCCAAGGAGGTCTTTGCCAAGATCCCTCTGGACTCCATGAGAGAGATATACCGCCAGTGGGAGGAGCTCGGCCTGGGCACGCCTCTGCCGGCCGAGGATGAGAACGCCATTCGAGAGCACCTCTGTATCCGAGCCTACCTGGAGGCCCACGAGGCGTTCAACGAGTGGTTCAGACACATGAACTCTCCGCCCCAGAAGCCCACCCTGCCCTCTCAGGCCAAGTTCACAGAGACGGTGGCCCACGAGATGAAGGAGAAGGAGTACGAGATGGAGTACAATAACTGGAAGGGCCGCCTGGAAGCCCTGACTGACGAGGTGAAAGAAAAAATCTACAACGTGCTTCTGTTCGTGGATGGGGGCTGGATGGTGGACGTCCGAGAGTCCTGCACAGCACAGGCCAGTACCAGGAGAGCCTGCGGCTGGCCGACATCGTCGCCTCTGAGCAGCACCGGCTCTACCAGGTCTTTTCCAGAGAGGAGCTCCGGAAGTTTCTACAGAAGCTACGCGAATCTTCCCTGCTGTTGCTCGATCAAGGGCGGGATCCCCTGGGATACGAGATCCAGCCTTGAATGTCTCCAGCCCAGCAAAATCCTCCTGTTGGCGCTGAGTTTCTGTGGCTTCGTGGTGTTCACTAACCTGTCCCTCCAGAACAACACCATCGGCACCTACCAGCTGGCCAAAGCCATGACCACCCCCGTCATCATCGCCATCCAGACGGGCTACTACAAGAAGACCTTCTCGACCAAGATCAAACTGACAATGATCCCCATCACTCTAGGGGTGATACTGAACTCCTATTATGATGTGAAGTTTAACTTCCTGGGAATGGTGTTTGCAACGCTGGGGGTCTTTGTCACCTCCTTGTACCAAGTGTGGGTAGGTGCCAAGCAGCACGAGCTGCAGGTGAACTCCATGCAGCTGCTGTACTACCAGGCGCCCATGTCCTCAGCCTTCCTGCTCACCCTGGTGCCTTTCTTCGAGCCTTTGACCGGGGACGGCGGCATATTTGGCCCCTGGTCCTTCGCTGCACTGGGCATGGTGCTGCTGTCGGGAGTCGTTGCCTTTCTGGTGAACTTGTCCATTTACTGGATCATTGGAAACACCTCTGCTGTCACCTACAACATGTTCGGTCACTTTAAGTTCTGTATTACCCTGCTGGGGGGCTACATGCTGTTCCAGGACCCTCTATCGCTCAACCAAGGCCTAGGGATTGTGTGTACCCTGTTGGGGATCTTGTCCTACACGCACTTCAAGCTCACCGAACAGGAGGAGGAGCAGCCGTCTGTCCTCCGGGTGAGGAATGCCGCGGTCGGGGGCACAGGTAAAGTCGAGGGGAGCTCCTGTCGAGGCGAGCGGCTGCGCACAGTGAAGCAGTGTTTCCATCTGCGTGCTGCTTTTCTCCACGCTCGGGCTGCTGCGACTCCCCAGTCGGCCCTGATCGCCCCGGGGAGGATCTACACCATCATTGGGCTTCATCAGTACCATTCATCCTCCATCTCATGCATCCAGCTGTGGCTGGCGTGGGGAAGAGCAGCTGAGACTGCCGCTCTGGACGTGGGAAGTACCCGGGGCTACAACCAGTGGAGAAACGAGATCCAAGCATGGTCCTGGATGAAGACGGGCAGCCACACAGACTGGCCGCATATCTTCACTCTTCTGTCTCAGTTTTGGGCGGTGGTC

Function

symbol description
slc35e3 Predicted to enable antiporter activity and nucleotide-sugar transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E3 (solute carrier family 35 member E3).

NR:

description
PREDICTED: solute carrier family 35 member E3

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0051292 nuclear pore complex assembly biological_process
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K14301 NUP107, NUP84; nuclear pore complex protein Nup107

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006679 True 3886 mRNA 0.57 37 14227387 14251947

Neighbor

gene id symbol gene type direction distance location
AMCG00006680 NA coding upstream 6136 14206121 ~ 14221251 (+)
AMCG00006674 dyrk2,LOC107757277,LOC107573871,LOC107694272,LOC107587139,LOC107655591 coding upstream 241199 13977737 ~ 13986188 (+)
AMCG00006671 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 299501 13906573 ~ 13927886 (+)
AMCG00006667 NA coding upstream 558699 13640139 ~ 13668688 (+)
AMCG00006668 NA coding upstream 592933 13622994 ~ 13634454 (+)
AMCG00006686 cpsf6,LOC107729149 coding downstream 25528 14277475 ~ 14297977 (+)
AMCG00006682 LOC106609801,LOC107717680 coding downstream 50279 14302226 ~ 14308572 (+)
AMCG00006683 NA coding downstream 69077 14321024 ~ 14352438 (+)
AMCG00006684 cct2 coding downstream 106018 14357965 ~ 14364176 (+)
AMCG00006685 NA coding downstream 117866 14369813 ~ 14376801 (+)
G111420 NA non-coding upstream 89643 14136319 ~ 14137744 (+)
G111272 hmga2 non-coding upstream 724816 13458039 ~ 13502571 (+)
G111240 NA non-coding upstream 870316 13353956 ~ 13357071 (+)
G111161 NA non-coding upstream 1379885 12845923 ~ 12847502 (+)
G111148 NA non-coding upstream 1456462 12759571 ~ 12770925 (+)
G111443 NA non-coding downstream 59805 14311752 ~ 14312024 (+)
G111531 NA non-coding downstream 376779 14628726 ~ 14632980 (+)
G111562 NA non-coding downstream 484255 14736202 ~ 14737639 (+)
G111629 NA non-coding downstream 542771 14794718 ~ 14794949 (+)
G111635 NA non-coding downstream 557301 14809248 ~ 14811063 (+)
AMCG00006672 NA other upstream 287912 13933666 ~ 13939475 (+)
G111197 NA other upstream 1183939 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 1575572 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 1904109 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 4659111 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 6685550 20937497 ~ 20944977 (+)
G112567 NA other downstream 6796389 21048336 ~ 21049038 (+)
G112600 NA other downstream 6890918 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 7013306 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 7365685 21617632 ~ 21622508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028775 nup107 coding NC_007115.7 CM002888.2 22730795 ~ 22749553 (-)