AMCG00006680


Basic Information

Item Value
gene id AMCG00006680
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14206121 ~ 14221251 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006680
ATGCAAGTCGAAGTCGATGGACAGCAATGTATGCTTGAAATCCTGGATACAGCAGGAACGGTGCCGATGATCCTGGTTGGCAACAAGTGTGACTTGGAAGACGAGCGGGTGGTTGGCAAGGAGCAAGGCCAGAACCTGGCCCGACAGTGGAACAACTGCGCCTTCCTAGAGTCATCAGCAAAGTCAAAGATTAATGTTAACGAGGTCTGATAAACTGTTGTCTTTTTCAACAGTGCCAGCATTCCAACTTTACTAAACCTAACATCAATGGACTTTCCTGTGTGGTGATACCCTTTAACAAAATGGATTAAAAGCTACTACGTCAGTTTTTGCACATAGATAACTGTAATCACTCTCCAGTATCGCAAGAAAGAGAtttttacttatatatattctaactgtatgcaactgaaataaaagatcCGGAGCCTACACACAGTATTATTTGCTAATGGAGACGCCCTCCTTCAACCAATGTTGTAAATGTAAGAAACTGATGTATACTGGACATGTTGCCTGTGTAAGCAGTGTCAagtataatgtaatatttataagcACCACTATTTTAGCAAAAGAAAAAGTCCAAAGAGCTCCTATATAGCCTATTTCATACAGCTAACTTTGCTCCTTTggtattttgtatcttttttttttttccttttttttt

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0007417 central nervous system development biological_process
GO:0048699 generation of neurons biological_process
GO:0021510 spinal cord development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006680 True 667 mRNA 0.39 4 14206121 14221251

Neighbor

gene id symbol gene type direction distance location
AMCG00006674 dyrk2,LOC107757277,LOC107573871,LOC107694272,LOC107587139,LOC107655591 coding upstream 219933 13977737 ~ 13986188 (+)
AMCG00006671 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 278235 13906573 ~ 13927886 (+)
AMCG00006667 NA coding upstream 537433 13640139 ~ 13668688 (+)
AMCG00006668 NA coding upstream 571667 13622994 ~ 13634454 (+)
AMCG00006666 NA coding upstream 596746 13607983 ~ 13609375 (+)
AMCG00006679 slc35e3,LOC107710682,LOC106609860,LOC106576641 coding downstream 6136 14227387 ~ 14251947 (+)
AMCG00006686 cpsf6,LOC107729149 coding downstream 56224 14277475 ~ 14297977 (+)
AMCG00006682 LOC106609801,LOC107717680 coding downstream 80975 14302226 ~ 14308572 (+)
AMCG00006683 NA coding downstream 99773 14321024 ~ 14352438 (+)
AMCG00006684 cct2 coding downstream 136714 14357965 ~ 14364176 (+)
G111420 NA non-coding upstream 68377 14136319 ~ 14137744 (+)
G111272 hmga2 non-coding upstream 703550 13458039 ~ 13502571 (+)
G111240 NA non-coding upstream 849050 13353956 ~ 13357071 (+)
G111161 NA non-coding upstream 1358619 12845923 ~ 12847502 (+)
G111148 NA non-coding upstream 1435196 12759571 ~ 12770925 (+)
G111443 NA non-coding downstream 90501 14311752 ~ 14312024 (+)
G111531 NA non-coding downstream 407475 14628726 ~ 14632980 (+)
G111562 NA non-coding downstream 514951 14736202 ~ 14737639 (+)
G111629 NA non-coding downstream 573467 14794718 ~ 14794949 (+)
G111635 NA non-coding downstream 587997 14809248 ~ 14811063 (+)
AMCG00006672 NA other upstream 266646 13933666 ~ 13939475 (+)
G111197 NA other upstream 1162673 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 1554306 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 1882843 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 4637845 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 6716246 20937497 ~ 20944977 (+)
G112567 NA other downstream 6827085 21048336 ~ 21049038 (+)
G112600 NA other downstream 6921614 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 7044002 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 7396381 21617632 ~ 21622508 (+)

Expression


Co-expression Network