AMCG00006682 (LOC106609801,LOC107717680)


Basic Information

Item Value
gene id AMCG00006682
gene name LOC106609801,LOC107717680
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14302226 ~ 14308572 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006682
CAGGCGCACACACCGCAAACTTGCTGTTTCCGTGTTTAAAGAGTCTTAGCCCGAAGTGAAATAGTATTCAGCCTTCGAATACATCTTAATATCGATTTTATCTATAGAGGAtgcttttaaattgtgaatttatCCTTAATAGGCGCAGTATTTCTCCGGTCTGAAGGGTTTTTTGAGACCGTACACGGCAGTCTAAGACGATTCATTTCCCGGGCCGAAAGCGGTACCTTTCTGCACACGGCGGGGCAGCGGGCGGACACAGGGCCGGGCGCACACGGAGGACGGAAGCCGCCGGGGGACAGTTCCGTGTGCTGCACCAGGACCGCGGTGTCTGCCGTAGTGTGAATGACTGCTCGCAGGTCTACGGAGTTCAAGACTGCAAATTCAGAGGTTACATGgccttctttttaaaatacttgaaTGAGTCGGATCctatacaacactgtaccaGTCTACTACTTAGGAGATaaactcctttgaaatacatattccaTTTAAAATACTATGTTTAAGAGGATGGCTGAATTTGGTCCAGATTCCGGAGGGAGAGTTAAGGGAGTTACGATCGTGAAGCCCATCGTGTATGGAAACGTGGCTCGGTATTTTGGGAAGAAGCGAGAGGAGGATGGACACACGCATCAGTGGACGGTGTACGTGAAGCCTTACAGGAATGAGGTCACCCTCTATCACCTGCTGAAGCTCTTCCAGTCTGATTCCAGCGCGATGCCCAAGAAGACGGTGGTCTCTGAGTTCTATGATGAGATGATCTTTCAGGATCCAACTGCAATGATGCAGCAGCTACTGACAACATCAAGACAGCTGACCCTGGGAGCCTACAAGCACGAGACAGAGTTTGCAGAGCTTGAGCTGAAAACAAAGGAGAAGCTGGAATCGGCGAAGAAGAAGACCAGTCTGGAGATCACAGAGCTTAAGGAGCGACTGAAAGCCAGCAGAGAGACCATCAACTTCTTGAAGAGCGAGATCCGcaagctggaggaggaggaccaGATCAAAGACACCTGAGCAGCACTGCAGTGGGTTGATGAACTTGGGTGTCTGGAGCCGCTGAGGACATGAACTCGGCTCCGCGGTGGTGCTGCTCCTCAGCCGTCCGGCAGTGGCAAGCTGTCTGGCATccccacgcacacacaatcCTCAGTACACTTAATAACACCACGTAAAACTGTCCAATTCCCAGTGTGAAGAACCAGTGCAGTGAAATGCTGTCTATTCACTTGATTAAAGTTATTGTCATGGATGCAGTAGAACTGTTTGAAGGCAATGGGTTTGACCAGTCATGCCAGTTGCAACTGAACATGATTGTTTTATGCAATTGATGCTCAATGTGTCCCGGGGGGGTTTATTTAGtgaattgttttgtgtgtacattttatgtACTTGATATACTTTTTAACAAGAAAATGTCCTGCAGGATTGTGTGTTGTTCCTTTTGTTTATTGTAgtgtaaaaaatatgttttgcctttttttttatgtattctttacattttgtttaatacatattctcTCGGGGGAAAGGTTGCTGTTGTCAGTTGTAGGAGAACAGTGCTTGGCTGTGGGTTAGATTTAGCAATACTGCTGTACAAGTAGAGCAAGTGAACGAGCTCTGGAAGTTTTTTATAGGACATTTTCTTCATGTGCGTTTGTACAGCTGGTTAAGTGTAGTCCTTATAGTTATCGGTTAATGATACAGGGAATAGGATTGCAGTGGCTGTGCAAAGAATAAGCATCAGTGTGTATGATTTCTTTGATGCCTGTTTACCTAATGCAGTGTATTTTCGCATGTTATATAGAACATTGCATTAGTGCAGCTGTCTGTTCATAAGCCAGCACATTTTTTGAGCTGAAGCGGGGACAGGTTCCATTTTTCATGGGTCAAGCTCAGATTCACACACAGGCTGAGTTTGAACACTAGAGGTCAGGGTTATTTTGTACCTCAGGCCTTCCCAAGAACACCTGAGGAAGTTTGGCCATGCTGATTGCCTCTCAGTATTCCTGGCTGTTTTGTCATTATCTTGTAGCTGTTTACTTATTCTTTAGCTCTGTTTCTTCTGTGTGACGTGACTGACATTTTCAGGTCTCTGACTGAAGGCTGGGTTGAATGCTCATACGCTTACTCCTGAATTTTTAGAGGGTATTTCAATTGGTTTCTAAATTGAGGAccactggttttattttccttgttttaagcagagtttttcttgtttttgtgagGTTTCAAACCCCTTTTATGTAGCAAAGAAACAATCTGAGTGCAGAAATAAATGGGGGACTATTACCATAGTGTGTGGAAATATGTTAAGCTAGCTGTTCCCTGTGGTTTCATTTTGATGGTTCCCCTGCAAATGCCTCCCTCACCTGTCCCTGCTTGTTTGAGTTCAGTAGCATTAGTGTTGGGATAAACCACTTGGTTAAAGCTCATAACAATCgtatattcataatatattcATTGCCCTATTCATTCCTTCCAGTGGTTTATTGAAAAACACTGCAAGCGATTATTGGCCAGTATAAACTagcactatttacatttgtacgTTTGTAGAAAGCCGTAGATAGTAATGTTTAGTGCCTCTGAATAAGGTAGAGGTGGCTAAATAGAGCAGGAACTTAAACTATATACAGCTTTtactataaataatacagaacatGGCATgagagaaataacaaaaattgAACACCTGGGGTTTATCAATACTAAAATTAAATGCGAGTTTATACCCTCCCTATAAAAGAGCCAAGCTTAAGATAATGATAGTCATTGGAATCACATTTGTATGGCAGTTGCTCTATGTGGGGGCATGTTTTGGTGATCTGTTTTAACACGTGTTACAATTTGAAAGTGGAGCTCGAGGTAACCCGGCCTCAGGCCTCTCCTGCCTTTTCAGAGCTGGCTGGACATGCCAGTGATGTCACTGAAACGTGCTGCTGCGAGTGGGATGCAATGACATCACCCTGCCGTATAAACGAGAGGTCGCTGCCTGCAATGGGGTGGTGTGTGGAAAGAGTGTTGTCTCACAAAAGGCATAacatttcaacaacaaaaaagaatatCAGACATGAGCTCATCAACATTGTCATATTCTTTTTTAACACATgttgtgtaattgtttaaatggcAGAGGCTTGCTGTTTCCTACTGAATTAATCCTCCaagaaatttaaaacaaatatgcttATATAATCTACCCTGCCAAAGCCAACAGTATTCACTGCCCTACATAACCAACAGCACAATTATGAAT

Function

NR:

description
PREDICTED: YEATS domain-containing protein 4 isoform X2

GO: NA

KEGG:

id description
K11341 YEATS4, GAS41, YAF9; YEATS domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006682 True 3265 mRNA 0.43 6 14302226 14308572

Neighbor

gene id symbol gene type direction distance location
AMCG00006686 cpsf6,LOC107729149 coding upstream 4249 14277475 ~ 14297977 (+)
AMCG00006679 slc35e3,LOC107710682,LOC106609860,LOC106576641 coding upstream 50279 14227387 ~ 14251947 (+)
AMCG00006680 NA coding upstream 80975 14206121 ~ 14221251 (+)
AMCG00006674 dyrk2,LOC107757277,LOC107573871,LOC107694272,LOC107587139,LOC107655591 coding upstream 316038 13977737 ~ 13986188 (+)
AMCG00006671 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 374340 13906573 ~ 13927886 (+)
AMCG00006683 NA coding downstream 12452 14321024 ~ 14352438 (+)
AMCG00006684 cct2 coding downstream 49393 14357965 ~ 14364176 (+)
AMCG00006685 NA coding downstream 61241 14369813 ~ 14376801 (+)
AMCG00006691 NA coding downstream 85474 14394046 ~ 14395217 (+)
AMCG00006689 NA coding downstream 117197 14425769 ~ 14441636 (+)
G111420 NA non-coding upstream 164482 14136319 ~ 14137744 (+)
G111272 hmga2 non-coding upstream 799655 13458039 ~ 13502571 (+)
G111240 NA non-coding upstream 945155 13353956 ~ 13357071 (+)
G111161 NA non-coding upstream 1454724 12845923 ~ 12847502 (+)
G111148 NA non-coding upstream 1531301 12759571 ~ 12770925 (+)
G111443 NA non-coding downstream 3180 14311752 ~ 14312024 (+)
G111531 NA non-coding downstream 320154 14628726 ~ 14632980 (+)
G111562 NA non-coding downstream 427630 14736202 ~ 14737639 (+)
G111629 NA non-coding downstream 486146 14794718 ~ 14794949 (+)
G111635 NA non-coding downstream 500676 14809248 ~ 14811063 (+)
AMCG00006672 NA other upstream 362751 13933666 ~ 13939475 (+)
G111197 NA other upstream 1258778 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 1650411 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 1978948 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 4733950 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 6628925 20937497 ~ 20944977 (+)
G112567 NA other downstream 6739764 21048336 ~ 21049038 (+)
G112600 NA other downstream 6834293 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 6956681 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 7309060 21617632 ~ 21622508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location