AMCG00006686 (cpsf6,LOC107729149)


Basic Information

Item Value
gene id AMCG00006686
gene name cpsf6,LOC107729149
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14277475 ~ 14297977 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006686
ATGTTGTTTGAAACCCCGCCGCCTCCACACCCCCTCGGCCGGGCGGCGGATAGGCaggcggaggaggaggctgAGAGGAAAATGGCCGACGGTGTGGATCACATCGACATTTACGCGGATGTTGGCGAGGAGTTTAACCAGGAGGCTGAGTATAATGTGCACGAGCAAATAGACTTGTACGATGACGTCATTTCACCCTCTGCCAACAATGGCGATGCCCCCGAGGACCGGGACTACATGGACAACCTGCCGCCAGCGGGTGGTGATGATGTGGGCAAGGGGCCACCTACCAACGTGGTCTACACCTACACTGGCAAGAGGATCGCCCTGTATATTGGAAATCTCACATGGTGGACGACAGACGAGgatttgactgatgccattcGGTCAGTGGGAATCAATGACGTCTTGGAGATCAAGTTCTTTGAGAACCGGGCCAATGGCCAGTCGAAGGGGTTTGCCCTGGTGTGCGTCGGATCAGAAGCCTCCTCCAGGAAGCTGATGGACCTGCTGTCGAAAAGGGAACTCCATGGGCAGAACCCCATCGTTACACCCTGTAACAAACAGTCACTGAGTCAGTTTGAAATGCAATCCAGGAAAACCACACAGTCCGGTCAGATGTCCGGTGAAGGGAAAGCTGGCCCCCCTGGAGCGTCTTCTCGTGCCGCGTTCGCTTTGGGTGGCAGAGGGAGGGGACGCTTCCCTGGACCTCCCGGCCCCGGTGGAGACCGCTTCCCTGGCCCTCCCGGTCCCGGTGGGCCGCCACCGCCCTTCCCAGGAGGCCTACAAGGACCCCCACGTCCCCCACCTGGCCCCCCTGGTCCCCCTGGCCCACCTGGCCCTCCCCCCCCTGGGCAGTCTCTTCCTCCACCTCTATCAGGGCCCCCCAACAGAGGCGATCGCCCCCCACCGCCAGTCATGTTCCCAGGCCAACCTTTCGGGCAGCCCCCAATGGGCCCCCTCCCCCCTGGCCCGCCTCCCCCAGTCCCAGGCTATGGCCCCCCACCTGGACCTCCACCGCCACAGCAGggccccccccctcctcccggACCCTTTCCTCCCCGCCCCCCAGGTCCCATCGGACCCCCCATCACCCTGGCACCCCCACCACACATGCCCGGCCCCCCACCTGGCGCCCCTCCCCCAGCCCCACACGTAAACCCTGCCTTCTTCCCTCCCCCTGGAAACAGCAGCATGCCCTCATCAGACAGCCGAGGTCCCCCACCTTCTGATCCCTACGGCCGCCCGCCTCCGTATGACCGAGACTATGGTCCCGCTGGCAGTAATCCGCGACCCTCGCTAATCTGCGGGTACGACCTAGGACCCCGAGACCCGTGGATAAACGAGGGGGTGGTCAATCTGAAAAATGGCGACCAGCACTTGCGCGATTCAAGTGATTCAGGGGAAATGGATGCTGCCAGAACCCCGCTGAGTGAGGCTGAGTTTGAAGAGATCATGAACAGAAATCGCGCCATCTCCAGCAGCGCCATCTCCAGGGCCGTGTCTGACGCCAGTGCAGctGACTATGGCAGTGCAATCGAGACCCTGGTCACTGCCATCTCTCTCATAAAGCAGTCCAAGGTCTCTGCAGATGACAGATGTAAAGTTCTCATCAGTTCTTTACAGGACTGTCTACATGGGATAGAGTCCAAGTCCTATGGCTCTGGATCCAGAAGACGAGAGAGGTCCAGGGAGAGGGACCACAGCCGCTCCAGGGAAAAGAGCCGCCGGCATAAGTCCCGCAGCCGCGACCGCCACGACGACTATTACCGGGAACGCAGCCGGGAGCGCGAGAGACACCGCGACCGAGACAGAGACCGCGACCGCGAGAGGGACCGAGAGAGGGAAATGTTCCATGTTCAGATAATGTCT

Function

symbol description
cpsf6 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA alternative polyadenylation; positive regulation of RNA export from nucleus; and protein-containing complex assembly. Predicted to act upstream of or within mRNA processing. Located in paraspeckles. Is expressed in several structures, including blastomere; central nervous system; digestive system; eye; and yolk. Orthologous to human CPSF6 (cleavage and polyadenylation specific factor 6).

NR:

description
cleavage and polyadenylation specificity factor subunit 6 isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006686 True 1872 mRNA 0.61 12 14277475 14297977

Neighbor

gene id symbol gene type direction distance location
AMCG00006679 slc35e3,LOC107710682,LOC106609860,LOC106576641 coding upstream 25528 14227387 ~ 14251947 (+)
AMCG00006680 NA coding upstream 56224 14206121 ~ 14221251 (+)
AMCG00006674 dyrk2,LOC107757277,LOC107573871,LOC107694272,LOC107587139,LOC107655591 coding upstream 291287 13977737 ~ 13986188 (+)
AMCG00006671 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 349589 13906573 ~ 13927886 (+)
AMCG00006667 NA coding upstream 608787 13640139 ~ 13668688 (+)
AMCG00006682 LOC106609801,LOC107717680 coding downstream 4249 14302226 ~ 14308572 (+)
AMCG00006683 NA coding downstream 23047 14321024 ~ 14352438 (+)
AMCG00006684 cct2 coding downstream 59988 14357965 ~ 14364176 (+)
AMCG00006685 NA coding downstream 71836 14369813 ~ 14376801 (+)
AMCG00006691 NA coding downstream 96069 14394046 ~ 14395217 (+)
G111420 NA non-coding upstream 139731 14136319 ~ 14137744 (+)
G111272 hmga2 non-coding upstream 774904 13458039 ~ 13502571 (+)
G111240 NA non-coding upstream 920404 13353956 ~ 13357071 (+)
G111161 NA non-coding upstream 1429973 12845923 ~ 12847502 (+)
G111148 NA non-coding upstream 1506550 12759571 ~ 12770925 (+)
G111443 NA non-coding downstream 13775 14311752 ~ 14312024 (+)
G111531 NA non-coding downstream 330749 14628726 ~ 14632980 (+)
G111562 NA non-coding downstream 438225 14736202 ~ 14737639 (+)
G111629 NA non-coding downstream 496741 14794718 ~ 14794949 (+)
G111635 NA non-coding downstream 511271 14809248 ~ 14811063 (+)
AMCG00006672 NA other upstream 338000 13933666 ~ 13939475 (+)
G111197 NA other upstream 1234027 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 1625660 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 1954197 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 4709199 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 6639520 20937497 ~ 20944977 (+)
G112567 NA other downstream 6750359 21048336 ~ 21049038 (+)
G112600 NA other downstream 6844888 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 6967276 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 7319655 21617632 ~ 21622508 (+)

Expression


Co-expression Network