AMCG00006701


Basic Information

Item Value
gene id AMCG00006701
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14863814 ~ 14891825 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006701
GATCTCAGCATGAACAACATCACCCAACTGCCCGCCAGTGCCCTTTCCAACCTCCACTTCCTAGAAGAGCTAATGCTCCAGAACAACCAGCTCAGACAGGTCCCCAGCGAGGCCCTTCAAAACCTGCGCAACCTTCAGTCTCTACATCTCCATAACAATAGAATTCGCTCCCTGGGAAAGAAATGCTTTGATGGCCTCCACAGCCTCGAGACTTTGGATTTAAATTACAACAATTTGGATGAGTTCCCCATTGCAATCAAAGCCTTGACAAACCTTAAAGAACTGGGTTTCCACAGCAACAACATCAAGTCAATTCCTGAGCACGCTTTCCTTGGAAATCCCTCTCTCATCACAATGTCCCTAAACGGAGCCACGGAGATCACTGAATTCCCAGACCTCACTGGCACCAAAAGCCTAGAAAGCCTGACCATCACTGGAGCCCGGATCACGTCTCTTcccagtgcagtgtgtgaaCAGTTACCAAACCTGCAAGTCTTAGATCTGTCCTACAATCTGATACAGCAATTGCCGAGCTTTAACGGCTGTGAGAAGATTCAGAAAATCGACCTGCATCACAATGAAATCCAGGAGGTCCATGCCGATACGTTTCAGGAGCTGACATCACTCCGATCCCTGGATCTTACCTCCAACCTCCTATCGTCTCTCCCTGTGACTGGCCTGCATGGTCTGACCCATCTGAAATTGGCCGGCAACGAAGGTCTTCAAGAGCTGTTGTCCGCAGAAAACTTTCCAAAACTGAGGGTTATGGAAATGCCGTATGCTTTCCAATGCTGTGCCTTTGTGTCCTGTGAAAACCAAAAGGTCCCCAACCCCTGGGACAAAGAGGAGAACAGCAGTAAAGATGACTTCATCAAGAAAGAGTCCAGCATACTGGCCAACCAAGGTCCGTTTCGGCCCTGTGATCATCTCTTCGGCAGCTGGCTCATCCGCAGTGGGGTGTGGATAATAGTGGTGCTGTCTCTGGTCTGTAATGGAGTGGTGGCGACCACTATTTTCTTTTCACCGAGCTTCATAACTGCATCCAAGCATCTGATTGGCCTTCTTGCCGTGGTCAACAGCCTCATGGGGCTCTCCAGTGGTGTCCTAGCAGTGGTCGATGCCTTGACGTTTGGGAGCTTTGCCAAATACGGGGCGTGGTGGGAGAGTGGCATTGGCTGCAAGATCACCGGGTTCATGTCGGTCTTTGCCTCGGAGACGTGTATCTTCTTGTTGACGACTGCCGCACTGGAGCGGGGTCTTTCCATCAAGTGCTCCAAAAGAGTGGAGACAAAGTCTGCCTCCAGCAACGTCAGGATCGTGTCGGCTTTTTGCTTCATCCTGGCGTTGGCCATCACCGTCCTGCCCTTGCTGCACGTGGGCGAGTATGGcatctcctctctgtgtctgccACTGCCCTTCGGAGAGCCATCCAGCCTGGGCTTCATGGTGGCCTTGGTGCTGCTCAACTCGCTGTGCTACTTTGTGATGACGGTCACCTACACCAAACTCTACTGCAACCTGGAGAAGGGAGAGCTGGACAACTTCTGGGATTGCTCCATGATCAAGCATGTGGCCTGGCTGCTTTTTACCAACTGCATCCTCTACTTCCCTGTAGCCTTCCTGTCCTTCTCCTCCCTGCTGAACCTGTCCTTCATCAGCCCCGAGGTGATCAAATCCATCCTCCTCGTCATTGTCCCCCTGCCAGCCTGTTTGAACCCCCTGCTCTACATGCTCTTCAACCCTCACTTCAAGGAAGACCTCGGCCTCCTTCTCAAGCAGACACGCTTGTTAAAGAGGTCCAAGCAGGCCAGCTTGGTCTCCCTGAACTCAGAAGATGCTGAGAAGCAGTCTTGTGACTCTACCCAAGCTCTGGTCACATTTAGCAGCTCAGAGAAGCCAGGCAACCTGTCAGACAACAAGTCCATCCTTCCATCTCCACAGAACATTGAAGGTTACCACTCCCAGTCAGTGGCATGTGTTCCGTATCATTAG

Function

GO: NA

KEGG:

id description
K04308 LGR5, GPR49; leucine-rich repeat-containing G protein-coupled receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006701 True 1992 mRNA 0.52 12 14863814 14891825

Neighbor

gene id symbol gene type direction distance location
AMCG00006697 NA coding upstream 83340 14771451 ~ 14780474 (+)
AMCG00006694 NA coding upstream 287542 14574681 ~ 14576272 (+)
AMCG00006693 kcnmb4 coding upstream 290402 14549343 ~ 14573412 (+)
AMCG00006692 cnot2,LOC108275083,LOC105023108,LOC105901945,LOC108436929 coding upstream 322468 14514304 ~ 14541346 (+)
AMCG00006688 NA coding upstream 397928 14450266 ~ 14465886 (+)
AMCG00006700 tmem19,LOC106594838 coding downstream 39198 14931023 ~ 14937252 (+)
AMCG00006699 rab21,LOC106609839 coding downstream 56346 14948171 ~ 14963480 (+)
AMCG00006704 NA coding downstream 86868 14978693 ~ 15002282 (+)
AMCG00006703 tph2,LOC108263971,LOC108423504,LOC106561539 coding downstream 114487 15006312 ~ 15037025 (+)
AMCG00006705 NA coding downstream 175063 15066888 ~ 15067622 (+)
G111635 NA non-coding upstream 52751 14809248 ~ 14811063 (+)
G111629 NA non-coding upstream 68865 14794718 ~ 14794949 (+)
G111562 NA non-coding upstream 126175 14736202 ~ 14737639 (+)
G111531 NA non-coding upstream 230834 14628726 ~ 14632980 (+)
G111443 NA non-coding upstream 551790 14311752 ~ 14312024 (+)
G111645 NA non-coding downstream 1974 14893799 ~ 14895938 (+)
G111666 NA non-coding downstream 48383 14940208 ~ 14942924 (+)
G111699 NA non-coding downstream 303469 15195294 ~ 15200003 (+)
G111726 NA non-coding downstream 584329 15476154 ~ 15476714 (+)
G111727 NA non-coding downstream 645604 15537429 ~ 15537841 (+)
AMCG00006672 NA other upstream 924339 13933666 ~ 13939475 (+)
G111197 NA other upstream 1820366 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 2211999 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 2540536 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 5295538 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 6045672 20937497 ~ 20944977 (+)
G112567 NA other downstream 6156511 21048336 ~ 21049038 (+)
G112600 NA other downstream 6251040 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 6373428 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 6725807 21617632 ~ 21622508 (+)

Expression


Co-expression Network