AMCG00006705


Basic Information

Item Value
gene id AMCG00006705
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15066888 ~ 15067622 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006705
ATGGCTGTGGACAACAAGCGGGGCAAGGGCTTATCGTTCACGCCGATGGGGATAGAGGACGCGTCCATGAGGAACGGCAGAGGCCTCTCCGATCAATGGGCCGACACGGTGGTGGTCCGCCCCAGGACCACCGAGCGGCACATCACCGTGCACAAGAGACTGGTGCTGGGCTTCGCCATCTCCATCCTCACCCTCATCGTGGTCACCATCATCGCCGTGCTGCTCAGCGTGAGGTTTGAGGGCTGCACCGGCGACGCCAGCTCCCGGGCTGCCAACGGGACTGTGCCCAAGTTCAACCACTCCAGAGACATCCTGTCCAACCACCGAGAGGACGACCCGGCGGTGCAGCCCTGGCGGCAGCTCCGGCTGCCCGGGTCTCTGCGACCGCTGCACTACGACTTGAAGATCACCGTCTTTCTGGATAACTTTACTTTCTCCGGGGAAGTGAGCATGGAGCTGGAGTGCCTGAACGCCACCAAGTTCATCGTGCTGCACGCCGACAAGCTGGAGGTGGCCAAGGCGCTGGTCTATGGGGAGCACAACAAGAAGCCAGGAGCCATGAAAGTTCACCGGCACTTCAGATATGCGGCCAACCAAGTGTTCGTCATTGCTCTGCACAGGGAGTTAAAGTCGCAAAGAACCTACAAAGTCAACATAACTTTCGAGGCTCAGATAGAAAATGAACTCCTCGGCTTTTTCCGCAGTTCCTACACACTGCACGGAGACAGAAGGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006705 True 735 mRNA 0.59 1 15066888 15067622

Neighbor

gene id symbol gene type direction distance location
AMCG00006703 tph2,LOC108263971,LOC108423504,LOC106561539 coding upstream 29863 15006312 ~ 15037025 (+)
AMCG00006704 NA coding upstream 64606 14978693 ~ 15002282 (+)
AMCG00006699 rab21,LOC106609839 coding upstream 103408 14948171 ~ 14963480 (+)
AMCG00006700 tmem19,LOC106594838 coding upstream 129636 14931023 ~ 14937252 (+)
AMCG00006701 NA coding upstream 175063 14863814 ~ 14891825 (+)
AMCG00006709 krr1,LOC107395694 coding downstream 606805 15674427 ~ 15683069 (+)
AMCG00006708 NA coding downstream 646205 15713827 ~ 15718338 (+)
AMCG00006710 NA coding downstream 652431 15720053 ~ 15726140 (+)
AMCG00006713 NA coding downstream 699489 15767111 ~ 15798662 (+)
AMCG00006721 zdhhc17,LOC102798393,LOC107708015 coding downstream 931774 15999396 ~ 16030884 (+)
G111666 NA non-coding upstream 123964 14940208 ~ 14942924 (+)
G111645 NA non-coding upstream 170950 14893799 ~ 14895938 (+)
G111635 NA non-coding upstream 255825 14809248 ~ 14811063 (+)
G111629 NA non-coding upstream 271939 14794718 ~ 14794949 (+)
G111562 NA non-coding upstream 329249 14736202 ~ 14737639 (+)
G111699 NA non-coding downstream 127672 15195294 ~ 15200003 (+)
G111726 NA non-coding downstream 408532 15476154 ~ 15476714 (+)
G111727 NA non-coding downstream 469807 15537429 ~ 15537841 (+)
G111764 NA non-coding downstream 674816 15742438 ~ 15742652 (+)
G111786 NA non-coding downstream 716897 15784519 ~ 15784762 (+)
AMCG00006672 NA other upstream 1127413 13933666 ~ 13939475 (+)
G111197 NA other upstream 2023440 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 2415073 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 2743610 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 5498612 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 5869875 20937497 ~ 20944977 (+)
G112567 NA other downstream 5980714 21048336 ~ 21049038 (+)
G112600 NA other downstream 6075243 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 6197631 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 6550010 21617632 ~ 21622508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027336 trhde.2 coding NC_007115.7 CM002888.2 23223881 ~ 23408029 (+)
grasscarp (Ctenopharyngodon idella) CI01153131_00000033_00000721 TRHDE coding CI01153131 null 33 ~ 721 (-)
striped catfish (Pangasianodon hypophthalmus) G276650 LOC108279602 unknown NC_047612.1 CM018558.1 4734931 ~ 4738999 (-)