AMCG00006708


Basic Information

Item Value
gene id AMCG00006708
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15713827 ~ 15718338 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006708
TCTTGTGGCTCAGACtgctgcagctctgcgcagGTCTGCGGAATCCccccgatcccattggtggaacGGGGCAGATTCGCGCAGAAGGTTTGCGCAGCAGGAAGTAAAACGTGTAAATACTCAAATAATAGAATGAGGAGTTGTGTTGTTGATGCATGCCTTCCGTGTGCCTTGTCATGCAGTAGATCTTGCGAATAACAAGTGTTGTGTTCATATCCTGAAAGTACGCCTGGCATTATCATCTGTTTCGTGTCTCCTCCGCTGGCCGCCATGCTGCTCAGCTCGTCCCAGCAGCTCATGGTGCTGTTCAGCGCGGTGCTGTTTGCGGTCGTGCTTTTCCCTCGGATGTTCGGAGGCGGATCGAAGGACCCGAAGCCATTCGATCCGCATTTCAATAGGAAAGTAAGAGGGCCTCAGGTGAATATGAATGCAGGAGGCGCGAAGAGCCAGCCATTTGAAAACATGCAGCAAATGAGAAAGATGATGGAACAAGAGATAAAGAGCGAAAGACTCAAAGGCAATAACAAAGGCTACGTGTTTACTCTGATGCCACTGTATGCAATTGGGGTTGGTGTGTTTGCAGCATACAAGTTTCTAAAGattaaatcaaaggATGAATCAAAAAATGACAAGGATAAGTGTTCTAAAGGGGCGAAAAAGTCTGATGAAACAGCTGAAAATCAACTGAATGAACTTGAACAACGCTTAGCACAGACCGAGAAGATGCTCAATTCAATACTGACCCAGCTGGATCCATTGACTACATGTGTTGAATCTGTGGCCTTTGAACAGAAGAATGAAATCATGGCGCAGTTACATTCCATCAGACAGCTGATGAAGAAAAGAGGCATGGACTGCCCTCCTATGAATGCTGAAGAAACGGCCTGTGATAAGAAGCTTGAAGACCTGATCGAGTCTTTGACTGCCAAGGAGAGTGAGGCAGAGGACAGCTCTGCGGAAAAGCAGGACGGCACCGCAAGAGGAGGAAACGTGCAAGAGCATCTGAACCCAGACACCATTTTAGGGGAAATTGTAGAAAGTGAAGTAGATGAAAACAATGACGGGAACCTCCATACACTTACCCTGAAGATTTCATCTGAAACTAGAATTGAAGATGTGGGTGCTCTTCGGAGCATGTGTGAAGAAATTGAAGAAACGGGGTTAAGACGACGTAACAGACCTGAATGAACACTTTTAAAGCAAAGCTAAATTAATGTCATCTTTAATGTCACAGAAAGATGTAAAACACAACTTCAGACGCTTCTTTTGGCATTACTGCTGGGTGTATGCTAATGTAAAATCACAATGGCCATGTTTACATGCATTTCAGTGCCAAATGTGCTTTAAGTCACAAGTGTAATTTGGAAAGGCACAATTAACACAGCAGTATTAAACAGACTTTTAATAGTTCCTACAtccataataattatatttcaaaacatgagAAAATACTAACACACAGAATGACACTGATTTATGATGAGACATATTCAAGTCGTTCCATGTAGTTTCTTCACATGGTtttgtaatgacattttaatcacTCTGCTCAGGGTTAAACTAAGTCTCTAAAGCCCGGGGGTGCAGCCTTGGTAGGCAAATCTTCCCAATCTCTATCAGTTAGTAAGAGGAACCTGCATGACAAGAACAGAGTAAAGGATAGCAACACgatctgtaaaaaaatatagcCAGCCCATCTAAATGCAATGGTAAAGCCTGGTCTGTATTACACCACTGTTGTAAATTAGCcataattatttaaacttgtgatttaaaacacaacatttggCATGACATGTAATCAccaatcatgtttttaaaatgttgttccTTTTAAGGATCTTTCTTCCTGATTTTCATATCAATGCgatataaatgtaaaactggACATTGTTATGAATTaggcctggattaaataaaaacattagccCCACTCCCACAGTTCACCAGGCTCAGTTCATAGCTGCTTTCTATCTAATTGACGTGCATTTTGGAGGTGGGTTGAAGTTGTGTTTTAATCTGGTTATTATATCGAGAGTATataaatagttaatttatttaaatgtactgtaagcTGTATGAGAATCGTACGTGTATGGGACCTCTTCTACATCttgcatgttttcaatgattgtaAAAGTCTCAATTCAGTCTCCATTTTAATCACTGCTGTGTGTTAACATGTAGCTTGTTATGAGTGAAGGTGATCAGCTCTCATGATTTAGGGTTAATTTAGAGGTTTCATTCTTTTATACAGGGGTTCTTTTCTGAGAAAACTATAATGATGTTACAGTGGTTTGTTGTTGGAACACCATTAGAAGCTTAGatagtattttacattcacCATAGTAGCATATGAGAAAtcaaggatatatatatatatatatatatatatgcctatgGTGCTTCCTCTTAACATGCTGAACATAACTGATATTATTACCAAGAAGAAAATGtggatattaatattatatattatgatgttttattattataaaatccTTTATGTAGTATGTTTGCATCATTTAATTCCCAGCTCAATTTTAATGAGTGGGCAAAACCTGTTGCATATACTATATAAGCCAGATAATGAAACCATTTGAAGGAATTCATACAGAATGATGCAGTTATGAAGGCTACAGTACAAACTGTAACAAGTAAATGAGCATGACATATATGTAACCTATGTTAGTGTTTGCAGaaacttatatttatattctctgCTCAGCATATGTTTATTGtatgcagaaatacaaatgcTATATACATTAATAGCACAGTGGAAATGTGGGTTATAGTGCAGACATTATGAAGTGCTTCAATAAATACTTCATGCCTTACttcaaataaat

Function

GO: NA

KEGG:

id description
ko00900 Terpenoid backbone biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006708 True 2852 mRNA 0.39 6 15713827 15718338

Neighbor

gene id symbol gene type direction distance location
AMCG00006709 krr1,LOC107395694 coding upstream 30758 15674427 ~ 15683069 (+)
AMCG00006705 NA coding upstream 646205 15066888 ~ 15067622 (+)
AMCG00006703 tph2,LOC108263971,LOC108423504,LOC106561539 coding upstream 676802 15006312 ~ 15037025 (+)
AMCG00006704 NA coding upstream 711545 14978693 ~ 15002282 (+)
AMCG00006699 rab21,LOC106609839 coding upstream 750347 14948171 ~ 14963480 (+)
AMCG00006710 NA coding downstream 1715 15720053 ~ 15726140 (+)
AMCG00006713 NA coding downstream 48773 15767111 ~ 15798662 (+)
AMCG00006721 zdhhc17,LOC102798393,LOC107708015 coding downstream 281058 15999396 ~ 16030884 (+)
AMCG00006724 NA coding downstream 616772 16335110 ~ 16345016 (+)
AMCG00006725 NA coding downstream 636112 16354450 ~ 16356424 (+)
G111727 NA non-coding upstream 175986 15537429 ~ 15537841 (+)
G111726 NA non-coding upstream 237113 15476154 ~ 15476714 (+)
G111699 NA non-coding upstream 513824 15195294 ~ 15200003 (+)
G111666 NA non-coding upstream 770903 14940208 ~ 14942924 (+)
G111645 NA non-coding upstream 817889 14893799 ~ 14895938 (+)
G111764 NA non-coding downstream 24100 15742438 ~ 15742652 (+)
G111786 NA non-coding downstream 66181 15784519 ~ 15784762 (+)
G111788 LOC106576514 non-coding downstream 131583 15849921 ~ 15869801 (+)
G111898 NA non-coding downstream 996480 16714818 ~ 16722048 (+)
G111909 NA non-coding downstream 1061064 16779402 ~ 16810470 (+)
AMCG00006672 NA other upstream 1774352 13933666 ~ 13939475 (+)
G111197 NA other upstream 2670379 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 3062012 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 3390549 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 6145551 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 5219159 20937497 ~ 20944977 (+)
G112567 NA other downstream 5329998 21048336 ~ 21049038 (+)
G112600 NA other downstream 5424527 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 5546915 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 5899294 21617632 ~ 21622508 (+)

Expression


Co-expression Network