AMCG00006709 (krr1,LOC107395694)


Basic Information

Item Value
gene id AMCG00006709
gene name krr1,LOC107395694
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15674427 ~ 15683069 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006709
GAACAATGTTGTGTCTGAGCTGGACGGTGTATGATCTCTGCATTTCGCTCACATGTTTCTGTTACACAGGCAGAGAACATAccatcccacaatgcaccgctTCGGGTAAAACGGAAGTTCCCGGGGATCGTGACGCGGGGGTGAAAGGTTACGTAGTGAAAATGGCGACTTCCGTGGAAGCAGCAGGCGTGAGAGCAAAGCCAAgggagaagaaacagaaaaagcaaagccaagTTGATGAGTCCGAGCTTCTGACAGTTCCTGAAGGATGGAAAGAGTCGCCATTCACGAAAGAGGACAATCCCCGGGGTTTGCTGGAGGAGAGCAGTTTTGCTACTCTCTTCCCCAAGTACAGAGAAGCCTACCTAAAAGAGTGCTGGCCACTCGTTCAGAAAGCCCTGAATGATTCTcACATCAAAGCAACCCTAGACTTGATTGAGGGTAGTGTAACTGTCAgcaccacaaaaaaaacatttgatccaTATGCTATTATACGTGCCAGAGATTTGATAAAGCTGTTGGCAAGAAGTGTTCCATTTGAACAGGCTGTGCGAATTCTTCAGGATGATGTGGCCTGTGACATCATTAAAATTGGGACTTTAGTACGAAATAGAGAACGATTTGTGAAAAGGAGACAGAGACTAATCGGTCCAAAAGGATCAACTCTAAAGGCTCTTGAGCTGTTGACAAACTCTTACATTATGGTTCAGGGGAACACAGTGTCTGCTTTGGGACCGTACAGTGGTTTAAAGGAAGTCAGAAAAGTTGTCTTGGATACAATGAAGAACATTCATCCCATATACAACATAAAGACTTTGATGATCAAGCATGAGTTGGCAAAAGACCCCGATTTGCGAATGCAGAACTGGGAGAGGTTCCTGCCTCACTTCAAACACAAGAACCTAAGCAAACGCAAGGAGCCCAAGAAGAAGGCCATTGATAAGGAATTGGCTACCGGAGAGTTCTTCCTCCGAAAGACTCAAAAGAAACGTAAGAAGATGGAGGAAATAAAGGTGAAGCAAGCTGAAGTATTAAGCAAGAGGCAGGAAGAAAGGAACAAGGCATTTATTCCTCCAAAAGAGAAACCAGTggttaaaacaaagaaagtTCCTGCTGAGGCTAAAATAGATATCGCAGCCATCaaagagaaagtaaaaaaaGCCAAGAATAAGAAGCTTGGTGCCCCTCCAGTTAACCCTGCCCTTCAGACGTCTGCGaacgaaaagaaaaagaagcgGAAAGGCTGAATGTGTTTTGACTTATATGAGAACATTATTGGACTTTTCCATTTCTCCTGGCAAGGCTGTGGTTCTGAGTTCACGACCGCTTTCTAAATTCTGCATCTCAAAGACCAAGGTCTTGATTACTAGAACCTGAAACCTGTTTTGGTGGTGTCCAAGTGGAACAGTATCTTTGTTCCATGTTGAGAACTATTTCTGTTCAtccatttgtgattttttttatgtccatgtaaaatatacacaataaatacaatcttaatgttatttcattttattaaggtttgttttgtagttgCTTCACATCATACAGACAACTACAAAGCATTCACCTGTTTTACTAATTCTAGTGTGGAAGCTTTGGTTTTTAATGCTTTGTGGTTTTCATTGAAAACGTATTTCAAAATACCATTCAGTGttttgggattttattttatttttaaaccaaaatggATACATGtcagacatttaattttaacaatccAGTTTGTCTACTAATTGATATTTCAACATAAAAGTCACTAGAGAACTGGGATGCTGTAACAAATCAAAGGGAATTACTTGCATTTATCTGAAACAGAAAGATACATTATTCCACATGTCCTACAAACCAAGATAAGACAGCAGTGTTGACAATATAGAAACATGAAAGAGGCAGGTGGGGGCCCCACATCTCTTAAAGTAGAAAATAGTAAGTGCATAGTTGTAATAAGGATACCCTGTTCTCCCTGGTGAATCCATGATGAATCGTGAGTGATTTCTATTACTCAGATGAGAATATTAAAGGAAATTCCACCCAGCACCACAGAACCAATGCCAGTGTTAATGGTGATAACTAACCTTTTTGCACTGGTAACAGTTAAATGACCTTGCCATCTCCATCTTTCTTACAAAAGTTAACTTTGTAAACCATAATGTCTGTTCCTTATGATAAATCTCAAATTTGTAATTTTCCTTGTAATGGTGCCAAATACCTAAATCAGTTGTTCTGtaaatttgttttccattgtatgttttattgtaattgtgatttattagGAGTAGCATGTTCCTCTGGTCTGCCTTCCCAAAAGGCACGGTCTACTGGACCTAAAATGTTAGTTCTTATACAGTTGACTACAGACTCCCATACATAGTGATTGGtcacaaagaacaaaaatattctTTGGCATaaactttttttcctcctgctctctttttccatgtattttaaGCCACAtttcatagttttgttttaaaaggtacAGTTTAGGCCCAGGAACCTATGCCAAGAAATGGTTTCTGAAGTTCGATGCTTCTAAGGAGACTTGCCTCTGcccagcttttgtttttttcgacCTGCCTACAATACGATTGTATATGATTGTGATATTTTTCCAGTGTACCCACCCATGCTGCTTTGTGGAACTAGATTTGAAGTTACCTTGACTGCAATAGTAAAGATGTTTCCtctgataaaatgtaaatttctaagaaatgttttactttcatgtgcatttttttccttGTATGTATAAGTACCAATATTTTTGTTGGAGAAGCATATAAAGGCATTAAATTGATACGTAATCTCTAAATAATACAAACGACATGCACTAAAAGCAAAATCTTCTGAAGCTAAAGTCTTAAAGCTaatatctgtatttgtatttattttttcctgttcatACAACAAGCTATTGTGTCACAGTATTAAGTGTGTAGCCCACATGCTCTAAATGGTGCAAGTATTTAACAATTTGTGTCCAGTTCATGTAGTGTGTGTAAGGTATGCTTGGAGAAACCATATACAAAAGCCAGTTTATTACTATTCAATAATTTTACAACAGCAGGGACCACAGCATTATGACTTATAGTTAACTTGTTTTCATAACGTTACATGTGTGTTCTACAACTAAGTGATGTGTAATTTTAACAAAGGAGTAAGGAAAAATaagattattaattttaataagtaCAAAGTGTATTTCTTATCATCATACACAACAAACCAATTAGGCTaactcaaatgtatttaaagtaaagAGTGGCATTAATCTCCAGTGTAACAAAATCTGTAACATGTATAGTAATTTACAGGCAGTAGAGTTGCCAGggagttattataattattacactAACATGGGAGTTACTGTCAAGTGTgatacattacacatttttctgAACAATCTACAGTATTTATCCCAGTACTGTACATTACAGTCAATTCTGGTAAGAGTTACTGAATTATTAGTTCTG

Function

symbol description
krr1 Predicted to enable RNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human KRR1 (KRR1 small subunit processome component homolog).

NR:

description
KRR1 small subunit processome component homolog

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K06961 KRR1; ribosomal RNA assembly protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006709 True 3476 mRNA 0.38 10 15674427 15683069

Neighbor

gene id symbol gene type direction distance location
AMCG00006705 NA coding upstream 606805 15066888 ~ 15067622 (+)
AMCG00006703 tph2,LOC108263971,LOC108423504,LOC106561539 coding upstream 637402 15006312 ~ 15037025 (+)
AMCG00006704 NA coding upstream 672145 14978693 ~ 15002282 (+)
AMCG00006699 rab21,LOC106609839 coding upstream 710947 14948171 ~ 14963480 (+)
AMCG00006700 tmem19,LOC106594838 coding upstream 737175 14931023 ~ 14937252 (+)
AMCG00006708 NA coding downstream 30758 15713827 ~ 15718338 (+)
AMCG00006710 NA coding downstream 36984 15720053 ~ 15726140 (+)
AMCG00006713 NA coding downstream 84042 15767111 ~ 15798662 (+)
AMCG00006721 zdhhc17,LOC102798393,LOC107708015 coding downstream 316327 15999396 ~ 16030884 (+)
AMCG00006724 NA coding downstream 652041 16335110 ~ 16345016 (+)
G111727 NA non-coding upstream 136586 15537429 ~ 15537841 (+)
G111726 NA non-coding upstream 197713 15476154 ~ 15476714 (+)
G111699 NA non-coding upstream 474424 15195294 ~ 15200003 (+)
G111666 NA non-coding upstream 731503 14940208 ~ 14942924 (+)
G111645 NA non-coding upstream 778489 14893799 ~ 14895938 (+)
G111764 NA non-coding downstream 59369 15742438 ~ 15742652 (+)
G111786 NA non-coding downstream 101450 15784519 ~ 15784762 (+)
G111788 LOC106576514 non-coding downstream 166852 15849921 ~ 15869801 (+)
G111898 NA non-coding downstream 1031749 16714818 ~ 16722048 (+)
G111909 NA non-coding downstream 1096333 16779402 ~ 16810470 (+)
AMCG00006672 NA other upstream 1734952 13933666 ~ 13939475 (+)
G111197 NA other upstream 2630979 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 3022612 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 3351149 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 6106151 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 5254428 20937497 ~ 20944977 (+)
G112567 NA other downstream 5365267 21048336 ~ 21049038 (+)
G112600 NA other downstream 5459796 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 5582184 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 5934563 21617632 ~ 21622508 (+)

Expression


Co-expression Network