AMCG00006716 (nap1l1,LOC106609764)


Basic Information

Item Value
gene id AMCG00006716
gene name nap1l1,LOC106609764
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15849921 ~ 15869937 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006716
GTGAGGCGGCGAGCCCCTCCCCCAGCCGGCGCGTTGCCCGGGCGACGGCGCGGTTTTACGTGATGACGCGCGATGTATATGAGCGCGAGCGGCGGGATCTCTTTCCCTTTTACCGCCATCCGCGCGGAGCCTCCCCGAGCAGACGCACTCCGCCGGCCGCCAGCAGCAGCGAGCAAAGATCAGGCCGAACTGGATCCGGCAGACATGGAAGATGTGGAGGAggtggaagaagaagaaactggAGAAGATGTCAACAGCAAAGCTCGTCAGCTAACAGTCCAGATGATGCAAAACCCCCAGATCCTGGCTGCTTTGCAGGAGAGGCTGGACGGGCTAGTGGGATCACCGTCGGGCTACATGGAGAGTTTACCTAAGGTAGTCAAGAGACGTGTCAATGCCCTCAAGAACCTCCAAGTCAAGTGCGCCCAGATTGAAGCCAAGTTTTATGAAGAAGTACACGAGTTGGAAAGAAAGTATGCTGCTCTTTATCAGCCTCTCTTTGATAAGCGAAGTGAAATCATCAAAGCGGCCTACGAGCCAACCGACGAAGAGTGTGAATGGAAGGCAGATGAGGAGGAAGAACTGACAgaggaaatgaaagaaaaggcaaaagtagaagaggagaaaaaagatgaagaaaaagaagatcCCAAAGGAATCCCAGAGTTCTGGCTGACGGTCTTTAAGAATGTTGACTTGCTCAGTGACATGTTGCAGgagcATGATGAACCAATTCTTAAGCACTTACAAGACATCAAAGTTAAATTTTCAGATCCGGGACAGCCTATgAGTTTTACATTAgagttttattttgaatccaACGACTTCTTCACAAATGAAGTATTGACAAAAACCTACAAGATGAGGTCAGAGCCGGATGAAGCAGACCCCTTCTCCTTTGACGGGCCAGAAATCATGGGCTGCACAGGCTGTCAGATTGACTGGAAAAAGGGAAAGAATGTCACGTTAAAAACCATTaagaagaagcagaagcacAAGGGAAGGGGCACAGTCAGGACAGTGACTAAAACTGTGCCCAACGATTCATTCTTCAATTTCTTCACTCCTCCTGAAGttccaGAAAATGGAGAGCTGGATGAGGACTCGGAGGCCGTGCTGTCTGCAGACTTCGAGATCGGGCACTTCCTCCGGGAGCGCATCGTGCCCAGGGCGGTGCTGTACTTCACAGGCGAAGCGATAGAGGATGACGACGACGACtatgatgaagagggagaggaagcTGATGATGAGGAAGGGGAAGAGGAAGCGGATGAGGAGAACGATCCGGATTATGACCCGAAGAAGGACACAAATCCCCCAGCTGAGTGCAAGCAGCAATGAAACCTGCGTTGGTGGCCTTGAGGATTAACTGCACTGTAACAgcttattaaacaaaacatagtTACTTACAGCcttataatgttttgtattttcttggtagaaataaaattaattttttttgttacaaaatcatgaagggccaGTTCCAAGCCTCGGCTCATTCTGCATAGTATTTTACTAGAACTTTTCTCTGTACAAATAGTTAGAATGCAGTAAATCCCTCttaagaaaaaggagaaaagaaaaaaaaaaaaagcatgaacaTGTTTCTTCACTGCTAAATAGTTTGGGTTCTTGTGAAGTCTTTTGTTGTATTGCTCTTagacaacagctgtggaaagactgaattattttagagaccattgtttattccaacCTATTCCTTTCCCGACAAAGAACCAACCAAAGTAATCTTTCGGCCCAGTAGTCTCGGTGGGTTTGAGAAGTCCGTGCTTGCACTAGCTGTGCCTTCATTACATTGTTCTAGAAATGCAGTGCTGCAGTGACTTGTAATTTAGACTCAACTCGTTAAAAACATCCGTGGCTGGCTGTCAAAAGGGGAAGAAACCATGCCCAGCCATGGAAGAAACTCAATCAAACATGAGTTGTGTACTGTGCATATACTATATGCTTGttaatgctgttttttatgTGAAATGATCTCTCCCCCTTAAAGAACTGCATAGACACCACAAAGGTTATTGTATCACTTGGgtgtgaataaaaacaattagtATTTTCAGATGTTTGTTTCTCTTATGTCTTTTTATTTCAATCAATACATTCCAGTAAATTAAAATTGGAAAGGGATCTTTGAATCTTTAGGGAACCATATCATATTGAAGTAGTGCTGATTGGTCATTTTGTGTAAAGGGATTCTTGCTGTAAATGACAACGCTTGGTTTATACATGGGCACTGCAGTCTTGAGTAATGGTTATCATAAGACCTCCTGAACTGGAGATGGGAATGTGGAAAGCTTTATTGCTGTACATAGACATTGTTACTTCACTCCTGTGTCCCTCACTGTCTGAGGACAAGGGGCCGTGTGAGCCCTAAACATTCACTGGCTGTGTTGTTGTACATGTCCAACTTTTGAGTACAGATGTAGTGCTAGTGGTGTTTGATCAATTGTTTATAATGGCATTTGGTGAACCTCATGTTACTTTAGATGTCCCTAATACATGCTGTCCTGTACCATATGGTTACATTTCAGTAGTGGTTTGTCATTTTTGTCGCATTCGTAATACGCTTATTCTGTTTTCTGAGTAATCTGAGAATGAATGGGTGTTAGATCATCCCTTTTAAATCTAATCAAAGAGCACTTACTAGTGGAAGTAATTGACTTTTATTCAATGTATTGCACCCTAGGGCTTTGTACTAACTGTTAAACATTTCTCTGTAGCTATCCATTTAAGTAAATCATCCTTGCTTAAAACCTGGTTATTATACTAGTTGCATCTTGTGATCGATCTAATGGAAATGCTAAActacatatttgtgttttgtggaaGGAATGGGTTAGAATATTTTACCAAAACTAATTTAGTTTCTGGCTGGGCTTCAACTGGTTAATGTTGCACTTTTTGTGTTCTATCAAACGTGggcattttagtttatttgtggAACTGTCCTCTGATGGTTAACATGCAGACATGCTTAATTATAGCAGTGCTGcacttaaaagtaatttaaaataaatgttacatagTCTGGCCTCCGTTTGTTTAGCTGTTCACCAGGGATTAGGGTTTTTAAAAGCTGAACAGATGGAAGCCCACAGTATGTGGAAGGCTTCTCCTAGAATCTGTGTTCCTGGTTCCCCTGTCCAGGGAGGCCAGTGCTGTAGCACATGAGACTGAAATCTGATTTGCAGGGAAAAATGAGAGTCTCCCGGGGACTCGACATCAAAATTGCGTGTGCATTGCTATCCCCATCCTGACCTCGGTGGCTGTGCATGGTGAAGCCCTGGAAACATTACACGTTCAGTAGGAGATCAATACCTATCTGACTGTATCAAAAGTGGATTCTGTCTGGATCATTTATAGCAGCTGTTGTCAAAGCAAAATGCTATGCTACAAAATACTAATGTACTCGATAATTGTACGTGTATGTATATTCATGAATAAATTTGTTAAATGTGCA

Function

symbol description
nap1l1 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within response to yeast. Predicted to be active in chromatin and nucleus. Is expressed in several structures, including immature eye; nervous system; neural tube; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to several human genes including NAP1L1 (nucleosome assembly protein 1 like 1).

NR:

description
PREDICTED: nucleosome assembly protein 1-like 1 isoform X2

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11279 NAP1L1, NRP; nucleosome assembly protein 1-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006716 True 3484 mRNA 0.43 14 15849921 15869937

Neighbor

gene id symbol gene type direction distance location
AMCG00006714 NA coding downstream 1144 15846231 ~ 15848777 (-)
AMCG00006715 NA coding downstream 84645 15756282 ~ 15765276 (-)
AMCG00006717 NA coding downstream 110473 15735298 ~ 15739448 (-)
AMCG00006718 NA coding downstream 114631 15734665 ~ 15735290 (-)
AMCG00006712 NA coding downstream 145314 15702374 ~ 15704607 (-)
AMCG00006720 osbpl8 coding upstream 29606 15899543 ~ 15928141 (-)
AMCG00006722 csrp2,LOC107383140,LOC107087065 coding upstream 162482 16032419 ~ 16039388 (-)
AMCG00006723 NA coding upstream 181429 16051366 ~ 16061810 (-)
AMCG00006734 NA coding upstream 846338 16716275 ~ 16783557 (-)
AMCG00006735 ppp1r12a,LOC107591124 coding upstream 930909 16800846 ~ 16835040 (-)
G111765 NA non-coding downstream 107206 15742446 ~ 15742715 (-)
G111759 NA non-coding downstream 120388 15728613 ~ 15729533 (-)
G111736 NA non-coding downstream 190509 15657998 ~ 15659412 (-)
G111730 NA non-coding downstream 291720 15557943 ~ 15558201 (-)
G111728 NA non-coding downstream 312085 15537476 ~ 15537836 (-)
G111940 NA non-coding upstream 992740 16862677 ~ 16862967 (-)
G111945 rs16,rps16,LOC103382554 non-coding upstream 1028482 16898419 ~ 16901537 (-)
G112020 NA non-coding upstream 1239040 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding upstream 1258380 17128317 ~ 17135516 (-)
G112140 NA non-coding upstream 2529326 18399263 ~ 18408777 (-)
G111767 LOC107575789 other downstream 96686 15752821 ~ 15753235 (-)
G111621 NA other downstream 1095951 14712017 ~ 14753970 (-)
G111489 NA other downstream 1485499 14360228 ~ 14364422 (-)
AMCG00006663 hmga2 other downstream 2346693 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 2971265 12876292 ~ 12878656 (-)
AMCG00006719 NA other upstream 11193 15881130 ~ 15896869 (-)
G112059 NA other upstream 1762954 17632891 ~ 17633445 (-)
AMCG00006754 NA other upstream 2469333 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 3753218 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 3763156 19633093 ~ 19635925 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G271086 NA non-coding CI01000066 null 2334596 ~ 2393844 (+)