AMCG00006721 (zdhhc17,LOC102798393,LOC107708015)


Basic Information

Item Value
gene id AMCG00006721
gene name zdhhc17,LOC102798393,LOC107708015
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15999396 ~ 16030884 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006721
TCGCAGAGCTGCCCTCTGCTTGTTTCCCTGCTGCTCTGGCGCTTCCCAGAATGCTCCGCGAGGTTTAACACCAAGATGGCTGAAGCTATGgatgaatatgaaaaagaaGCTGGATGTGTCCCTATTCTCCATCCAGAGGAAATCAAGCCCCAGAGTCATTATAACCATGGCTACAGTGAGTCACTTGGGCGAAAGAGCCACATTGATGATTACAGCACCTGGGACATTGTCAAAGCCACACAGTATGGAATATTCGAGCGCTGTCGAGAGCTGGTGGAGGCGGGTTATGATGTCCGACAGCCAGACAAGGAGAACGTCACCCTCCTGCACTGGGCAGCCATTAATAACAGAATAGATCTTGTAAAATATTACATATCAAAGGGTGCAATTGTAGATCAGCTTGGGGGTGATCTCAATTCAACACCACTCCATTGGGCCACAAGACAGGGACATTTATCCATGGTGGTGCAGCTTCTGAAGTATGGGGCCGACCCCTCTCTCATTGATGGCGAGGGCTGCAGCTGCATTCACCTGGCTGCTCAATTTGGACACACTTCAATTGTTGCGTATTTCATTGCCAAGGGCCAGgatGTGGACATGATGGATCAGAATGGCATGACTCCATTGATGTGGGCGGCTTACAGAACACACAGtgtgGATCCTACCCGGCTCCTCCTCACTTTCAATGTTTCGGTGAACCTGGGAGACAAATATCACAAGAACACGTCGCTGCACTGGGCTGTGCTGGCCGGCAACACCACCGTCATCAGCCTGCTGCTGGAGGCAGGGGCCAACGTGGATGCACAGAACATCAAGGGTGAAACGCCACTAGATCTTGCCAAGCAGAGGAAAAATGTCTGGATGATTAACCATTTACAGGAAGCAAGACAAGCGAAAGGTTATGACAGTCCTTCATTCCTTAAGAGGTTGAAGGCCGATAAGGAATTCCGCCAAAAGGTGATGCTGGGAACTCCGTTTCTGGTCATCTGGCTGGTGGGATTCATTGCCGACTTAGACATCGACTCTTGGCTCATCAAAGGCTTAATGTACGGAGCTGTCTGGGTCACGGTCCAGTTTCTTTCAAAGTCTTTCTTTGACCACTCCATGCACAGTGCCCTGCCTCTGGGAATTTACCTGGCCACGAAGTTCTGGATGTATGTGACCTGGTTCTTCTGGTTCTGGAATGATATCTTTTTCAATCTAGTTGTGTGGTACACTTGTATCTATGTCCCATTTacAATTGTTGAACTTGCAGAGACGGGAAGTCTGGACCTCAGCATATTTTGCAGTACCTGCTTGATACGGAAACCTGTTAGGTCCAAACATTGCGCTGTGTGTAACCGCTGTATTGCAAAGTTTGATCATCATTGTCCTTGGGTGGGCAACTGTGTGGACCTCTGGGAAGAGGCTCTGAACGGCACAGAGACTGTTTTGAATAACACCTGGTCTACTTTTCCTTCCTGCTGTTTAGGGAGTGGAAATCATCGCTACTTTATTGGATATTTATTCTTCTTGCTCTGTATGATCTGCTGGATGATTTATGGCTGCATCTGCTACTGGAGGATTCACTGTGCTACCACTTATACTAAAGACGGCTTCTGGATGTACGTCACTCAGATCGCCACCTGCTCCCCGTGGATGTTCTGGATGTTCCTCAACAGCATTTTCCACTTCATGTGGGTGGCTGTGCTCATAATGTGCCAGATGTATCAGaTTGCCTGTCTAGGTATAACTACCAACGAAAGGATGAATGCAAGAAGATACAAGCACTTTAAAGTCACGACAACATCCATCGAAAGCCCCTTCAATCACGGCTGTATTCGGAACATCATAGACTTCTTCGAATACAGGTGCTGTGGTCTGTTTCGTCCCGTTGTTGTAGACTGGACAAAGCAGTACACGATCGAGTATGACCAGACAACAGGATCAGGCTACCAGCTGGTGTAGCGCCACGGTCGTTCTTTGCGAAGTCATATCAAACCTAGGCGATCTCGGAGCGGTGCCTGAATATTTCCTTAACGAGACTGAACTCAGCTTGAACTAGCATGCTGTTGTGGGGCTACACGAGAACAAAGAACAGAACCTCCTTTTTCACCTGACATTTTCCTGACATGGACAGTCTGTAACTGCCAACcaagtggaggaggaggaggaggaggagaaggaggaaaaagggatttatttgtaaacagtagtcatttgca

Function

symbol description
zdhhc17 Predicted to enable palmitoyltransferase activity. Acts upstream of or within axonogenesis. Predicted to be located in several cellular components, including Golgi apparatus; cytoplasmic vesicle membrane; and presynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Is expressed in nervous system and spinal cord. Orthologous to human ZDHHC17 (zinc finger DHHC-type palmitoyltransferase 17).

NR:

description
PREDICTED: palmitoyltransferase ZDHHC17

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20032 ZDHHC13_17, HIP14; palmitoyltransferase ZDHHC13/17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006721 True 2204 mRNA 0.48 16 15999396 16030884

Neighbor

gene id symbol gene type direction distance location
AMCG00006713 NA coding upstream 200734 15767111 ~ 15798662 (+)
AMCG00006710 NA coding upstream 273256 15720053 ~ 15726140 (+)
AMCG00006708 NA coding upstream 281058 15713827 ~ 15718338 (+)
AMCG00006709 krr1,LOC107395694 coding upstream 316327 15674427 ~ 15683069 (+)
AMCG00006705 NA coding upstream 931774 15066888 ~ 15067622 (+)
AMCG00006724 NA coding downstream 304226 16335110 ~ 16345016 (+)
AMCG00006725 NA coding downstream 323566 16354450 ~ 16356424 (+)
AMCG00006726 NA coding downstream 346896 16377780 ~ 16425206 (+)
AMCG00006727 syt1 coding downstream 627411 16658295 ~ 16677242 (+)
AMCG00006728 syt1,LOC101079537 coding downstream 664581 16695465 ~ 16698111 (+)
G111788 LOC106576514 non-coding upstream 129595 15849921 ~ 15869801 (+)
G111786 NA non-coding upstream 214634 15784519 ~ 15784762 (+)
G111764 NA non-coding upstream 256744 15742438 ~ 15742652 (+)
G111727 NA non-coding upstream 461555 15537429 ~ 15537841 (+)
G111726 NA non-coding upstream 522682 15476154 ~ 15476714 (+)
G111898 NA non-coding downstream 683934 16714818 ~ 16722048 (+)
G111909 NA non-coding downstream 748518 16779402 ~ 16810470 (+)
G111941 NA non-coding downstream 832272 16863156 ~ 16863355 (+)
G112106 NA non-coding downstream 2183909 18214793 ~ 18215048 (+)
G112181 NA non-coding downstream 2662994 18693878 ~ 18694311 (+)
AMCG00006672 NA other upstream 2059921 13933666 ~ 13939475 (+)
G111197 NA other upstream 2955948 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 3347581 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 3676118 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 6431120 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 4906613 20937497 ~ 20944977 (+)
G112567 NA other downstream 5017452 21048336 ~ 21049038 (+)
G112600 NA other downstream 5111981 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 5234369 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 5586748 21617632 ~ 21622508 (+)

Expression


Co-expression Network