AMCG00006722 (csrp2,LOC107383140,LOC107087065)


Basic Information

Item Value
gene id AMCG00006722
gene name csrp2,LOC107383140,LOC107087065
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16032419 ~ 16039388 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006722
GCACTGCAATGTAGGCTGGTGTTAAATGCAACCGATCAGCAGGTACAGCATTAAGCAAGACCTTGGTAGAATGATGTTGGTGCAAACTTTGATTATAATCTGTGAAAAGGGCCAAGAATGAGAGTCCTTTTGTGTTGTAAAAATAGTTCAAACTTTTCTTTTGACTGAGTTGATGCCAGAGATATTTAGTCTTTCTGAATGTTGCATATTTACTGTAATGGAATGCATTGAAGAGTGAATAGCGTTTTGTAGACTGAGAGAGTCACAAAGTGTTGAAATGCACCAAGGATTTTTGCTTTCCCAGGGAGGGGTAGTAAACTTAGATGTACTAGTCTGTTAGATGTATAGACCTCCACAACATTATACTATTGAAGACTACTGAATCCATTGTCCAAATATGTAGACTTTAGGGGTTATATTtctagggaaaaaaaaaaatgctttcaggaGTGGGGTCTATTTGCAAACAAACTAATATGGAACCACAGATTCCGAgcttaaattatattgtaacaaATTTTATCTTGCTTAAATTGGCAGAAATTTTGGAGAGCGGCAGTTCCGCATGCAGGGATTAAGCAGTTTTATTAAAGTTGACTGACTTTGAATCCCACAGCGAAATGGCATGTGCACATGGATCTGTTGTCCTAACGCCACTAAGAATAAGGCCAAACACTACATTCTTGTATGGTTTAAgaatgtaaaatttaaaattctCCATGGTTTTCTAGATTGTTGCCAAAATGCATTGTGTACACAGTATACAAGTTTCTTATTACTGGTGACTTGTATAGAATGAGGAAGGTGATTCAGCCAGAAACCGGAAGGACTTGTTAACCTCAAACTTCCTACTTGAGAAGCACCTCCATTTAAGCACGGTTGTACCTGTTCTTTTTGCCTCTTCAGTGTCAAAATGCCAAACTGGGGAGGTGGAAACAAATGTGCAGCCTGTCAGAGGACCGTGTACCACGCTGAGGAGGTGCAGTGTGATGGGAAAAGCTTCCACAAATGCTGTTTTCTCTGCATGGTGTGCAGAAAGGGTCTAGACAGCACCACCCTGGCCATTCATGACACGGAGATTTACTGCAAGTCCTGCTATGGGAAGAAGTACGGACCGAAGGGCTATGGCTATGGCCAGGGGGCTGGGACCCTCAACatggacagaggagagagactGGGCATCAAGCCAGAGGAaactCAGGATCATAAACCAACCACAAATGCCAACCCCTCCAAGTTTGCCCAGAAGTTTGGAGGCTCTGACAAGTGTGCCAGGTGTGGAGAGTCTGTTTATGCTGCGGAGAAAATCGTGGGAGCAGGAAAGCCCTGGCACAAAAACTGCTTCCGCTGTGCcaagtgtgggaagagcttggAGTCAACGACTCAGAccgagaaggagggagagatcTACTGCAAAGcttGTTATGCTAAGAATTTTGGACCCAAAGGATTTGGGTACGGCCAGGGGGCTGGAGCCCTCGTTCATGCTCAGTGAAAATGCCTTCTGATGATCTTCGAAGATAAATAGCTTTGTATATTACTCTGACTGTGAAACCCTTTGTTCAAACGCATACCTTTTAACTGGGAGAGTGGGGGTTCCTGTACAAAATGAAGGCtgactttttctttctattttgcaATGAATAAATCTTTTCATACTGTACAATACTTTGTGTATTTAGGACCCAGCTGTACACCTTTGCTAACACTATCCATGGTTCGTAGTTCTTGAAAGTTTTATTCATCTTAAAGCACAATATATTGGGACCCATTCCATTGAATATTGCTGCTTGTCTGTTCAAGCTCTCATGTACATCCTCTAGTATGAGATAAGTTAGTAAGAGTTGTGCACTGTGATTGAGAgaatttaacataattaaaagggCTTTGGTGGAGGTCTAATTTGAAAGAATGCATGCATCTAGTAATAACCTCTCATAAAACCCTTCACACACGTGAGGATTAACATCTGCTGCAtgcccagtttttttttttttttttttttttccttctcctctaACTGCGAGTTCCCTGCTGCTTTCCAATTGTCATAGtggtaattaaaatgaaggctGCAGTTCACTGGGTGCGTCACCTGGGTTCTTTAATTGGCGATTTCCAGTAGGCACACACAGCAGTGGCCATTGAGGGTGCACAATGCAACATGGAACACAGCTTAACATCATTACACCATAGGCCAGGTTTATTGgattaatttacaaaaccaaaacaaaaactgacatGACTTAAGGAGAGCTATTTTAGAAGTAACATTTGCAGGTTCAGCTTGATTTTTCTCCACAATGTAGTACAACAAAGGTCCTGAAAGTAAAGCAATACTTGGCACAGAAATGAAGGGGTTTCTATCGAATTAGTGAAGTATTCTGtgtgatgtaaaaataaaggaCTGGATACAGCAGGGAGGACAGAATTCAATGTGGAACCTCAGCGTATTGTTCCAAGTGCAAAATTCAGAGCCTTGAATAAAGAActgatgttttcaaaatatactgGAGTGTGTTGGGCAAACTTTGTAACCGGAAGAGCCGTTGTGGCTCAGTGTGCACCGAGGGGCATTCCCTGAAGCACAAGGGAAGACTGGATTAATTAAatctgcaaaatatatatatgggttAAATTCCAGTGCTTCTACGGTTCAGTAATTAATGTTGCTGGATCAGTTCTGCCAACAAGTGTCCCTTTTATAATATCCACATAAATAAGCAGGCCTTTACTCACGTCTTCATGATCAACTATGACTTTGCAACCTGTAGTCAGAAGCATAATGTTTAAACCTGTAGCCAGTAGCTGGGACCTGTGACAGTTAATATTCAAAAGGTGCTTCTCCCCACCTTTTCCgttttgtttaaaaaggggGAGCCAAGCTTCGGTAGAGAGATCCCACACCATTCCTTTCGATTGAAACTGTCAGCAGTagccctttaaaaacaaaccaataacaAGCACAGGGACAGATCCAAGCAACGATGTAAATCCCCATATATGACGAAGTGTGCTGTGCCCTTCCTGCCTTCACTCTTTCTAGCAAGTGTCCCAGATTTCTGCATGTAGACAGAATTAATAAACCACGAAAGAACAGGTCAACGTGAATCTATGTAATGATTTTGCTTGCTTTTGCTTTACAATTTTACATCCAGTGGTTTAACAAACTCGGTAtacgacaaaaaaaaaaaaaaaaaagtaaagaaa

Function

symbol description
csrp2 Predicted to enable actinin binding activity. Predicted to be a structural constituent of muscle. Predicted to be involved in muscle tissue development and sarcomere organization. Predicted to be active in Z disc and nucleus. Orthologous to human CSRP2 (cysteine and glycine rich protein 2).

NR:

description
PREDICTED: cysteine and glycine-rich protein 2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006722 True 3210 mRNA 0.41 5 16032419 16039388

Neighbor

gene id symbol gene type direction distance location
AMCG00006720 osbpl8 coding downstream 104278 15899543 ~ 15928141 (-)
AMCG00006716 nap1l1,LOC106609764 coding downstream 162482 15849921 ~ 15869937 (-)
AMCG00006714 NA coding downstream 183642 15846231 ~ 15848777 (-)
AMCG00006715 NA coding downstream 267143 15756282 ~ 15765276 (-)
AMCG00006717 NA coding downstream 292971 15735298 ~ 15739448 (-)
AMCG00006723 NA coding upstream 11978 16051366 ~ 16061810 (-)
AMCG00006734 NA coding upstream 676887 16716275 ~ 16783557 (-)
AMCG00006735 ppp1r12a,LOC107591124 coding upstream 761458 16800846 ~ 16835040 (-)
AMCG00006736 ppp1r12a coding upstream 821719 16861107 ~ 16861777 (-)
AMCG00006737 lin7a coding upstream 1020975 17060363 ~ 17072397 (-)
G111765 NA non-coding downstream 289704 15742446 ~ 15742715 (-)
G111759 NA non-coding downstream 302886 15728613 ~ 15729533 (-)
G111736 NA non-coding downstream 373007 15657998 ~ 15659412 (-)
G111730 NA non-coding downstream 474218 15557943 ~ 15558201 (-)
G111728 NA non-coding downstream 494583 15537476 ~ 15537836 (-)
G111940 NA non-coding upstream 823289 16862677 ~ 16862967 (-)
G111945 rs16,rps16,LOC103382554 non-coding upstream 859031 16898419 ~ 16901537 (-)
G112020 NA non-coding upstream 1069589 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding upstream 1088929 17128317 ~ 17135516 (-)
G112140 NA non-coding upstream 2359875 18399263 ~ 18408777 (-)
AMCG00006719 NA other downstream 135550 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 279184 15752821 ~ 15753235 (-)
G111621 NA other downstream 1278449 14712017 ~ 14753970 (-)
G111489 NA other downstream 1667997 14360228 ~ 14364422 (-)
AMCG00006663 hmga2 other downstream 2529191 13455432 ~ 13503228 (-)
G112059 NA other upstream 1593503 17632891 ~ 17633445 (-)
AMCG00006754 NA other upstream 2299882 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 3583767 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 3593705 19633093 ~ 19635925 (-)
G112420 NA other upstream 4196468 20235856 ~ 20236206 (-)

Expression


Co-expression Network